RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 COQ7Q99807 217 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 TRIM15Q9C019 465 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 LYVE1Q9Y5Y7 322 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 CACNG2Q9Y698 323 aa14.3□□□□□ -0.12
CLK3-210ENST00000563112 TRAV20A0A0B4J274 112 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 SURF4O15260 269 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 GPANK1O95872 356 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 FAM107AO95990 144 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 HLA-DQA2P01906 255 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 RAC2P15153 192 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 TNFRSF1AP19438 455 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 ATP6V1B2P21281 511 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 HIST1H3AP68431 136 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 MEP1BQ16820 701 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 SLC35F1Q5T1Q4 408 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 HIST2H3PS2Q5TEC6 136 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 HIST2H3AQ71DI3 136 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 PHC2Q8IXK0 858 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 OR52E2Q8NGJ4 325 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 APOBEC3DQ96AK3 386 aaPredicted RBP14.29□□□□□ -0.12
CLK3-210ENST00000563112 POFUT1Q9H488 388 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 MAGIXQ9H6Y5 334 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 LHFPL6Q9Y693 200 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 CDH10Q9Y6N8 788 aa14.29□□□□□ -0.12
CLK3-210ENST00000563112 ISPDA4D126 451 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 UBOX5O94941 541 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 CCNB2O95067 398 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 DBHP09172 617 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.28□□□□□ -0.12
CLK3-210ENST00000563112 COX10Q12887 443 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 ECH1Q13011 328 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 SCGB2A2Q13296 93 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 TRIM25Q14258 630 aaKnown RBP14.28□□□□□ -0.12
CLK3-210ENST00000563112 FAM98BQ52LJ0 330 aaKnown RBP14.28□□□□□ -0.12
CLK3-210ENST00000563112 CLEC12AQ5QGZ9 265 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 SHQ1Q6PI26 577 aaKnown RBP14.28□□□□□ -0.12
CLK3-210ENST00000563112 ZBTB46Q86UZ6 589 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 TEX29Q8N6K0 151 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 SDR9C7Q8NEX9 313 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 SLC26A10Q8NG04 563 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 OR2Z1Q8NG97 314 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 GAL3ST1Q99999 423 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 EGLN3Q9H6Z9 239 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 PTTG3PQ9NZH4 202 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 METRNQ9UJH8 293 aa14.28□□□□□ -0.12
CLK3-210ENST00000563112 CUBNO60494 3623 aa14.27□□□□□ -0.12
CLK3-210ENST00000563112 OR6C68A6NDL8 312 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 ZNF823P16415 610 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 MAGEA2P43356 314 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 LCN8Q6JVE9 175 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 SLC27A4Q6P1M0 643 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 FAHD2BQ6P2I3 314 aaPredicted RBP14.27□□□□□ -0.13
CLK3-210ENST00000563112 CORO6Q6QEF8 472 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 FBXW12Q6X9E4 464 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 RFLNBQ8N5W9 214 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 OR9Q2Q8NGE9 314 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 FAHD2AQ96GK7 314 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 LRGUKQ96M69 825 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 PITX2Q99697 317 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 FN3KQ9H479 309 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 REEP1Q9H902 201 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 IL19Q9UHD0 177 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 KCNG2Q9UJ96 466 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 PRPF19Q9UMS4 504 aaKnown RBP14.27□□□□□ -0.13
CLK3-210ENST00000563112 SVEP1Q4LDE5 3571 aa14.27□□□□□ -0.13
CLK3-210ENST00000563112 TCRBV5S2A0A599 114 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 TCF21O43680 179 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 PLPP2O43688 288 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 GASTP01350 101 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 IGHV2-5P01817 119 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 SLC18B1Q6NT16 456 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 Q6ZR03 302 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 RASSF6Q6ZTQ3 369 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 LINC00346Q8IVM7 164 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 ATG16L2Q8NAA4 619 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 OR4C15Q8NGM1 316 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 OR2T4Q8NH00 348 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 ST7LQ8TDW4 575 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 BTBD10Q9BSF8 475 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 TMEM106BQ9NUM4 274 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 TBC1D23Q9NUY8 699 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 IL20Q9NYY1 176 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 UBAP1Q9NZ09 502 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 NPTNQ9Y639 398 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 DYSFO75923 2080 aa14.26□□□□□ -0.13
CLK3-210ENST00000563112 WNK2Q9Y3S1 2297 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 DEAF1O75398 565 aaPredicted RBP14.25□□□□□ -0.13
CLK3-210ENST00000563112 PNPP00491 289 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 SELEP16581 610 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 HLXQ14774 488 aaPredicted RBP14.25□□□□□ -0.13
CLK3-210ENST00000563112 KRTAP24-1Q3LI83 254 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 SPRNQ5BIV9 151 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 OR2T5Q6IEZ7 315 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 OR2T2Q6IF00 324 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 ZNF770Q6IQ21 691 aaPredicted RBP14.25□□□□□ -0.13
CLK3-210ENST00000563112 OR5AS1Q8N127 324 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 AQP11Q8NBQ7 271 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 PROKR2Q8NFJ6 384 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 OR8G5Q8NG78 346 aa14.25□□□□□ -0.13
CLK3-210ENST00000563112 OR13G1Q8NGZ3 307 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms