RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 EXOSC8Q96B26 276 aaKnown RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 TAMM41Q96BW9 452 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 ISOC1Q96CN7 298 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 RBM18Q96H35 190 aaKnown RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 SMIM10Q96HG1 83 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 TMEM19Q96HH6 336 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 SLC35G5Q96KT7 338 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 ZNF681Q96N22 645 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 COL21A1Q96P44 957 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 WDFY2Q96P53 400 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 MS4A4EQ96PG1 132 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 SLC38A2Q96QD8 506 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 OR2A5Q96R48 311 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 MBOAT4Q96T53 435 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 STACQ99469 402 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 LPAR4Q99677 370 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 CHCHD6Q9BRQ6 235 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 COPS4Q9BT78 406 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 FNDC11Q9BVV2 318 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 CDCA4Q9BXL8 241 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 DGCR6LQ9BY27 220 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 ZNF717Q9BY31 904 aaPredicted RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 DEFB126Q9BYW3 111 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 VN1R1Q9GZP7 353 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 CCDC90BQ9GZT6 254 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 HOXD1Q9GZZ0 328 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 PIGUQ9H490 435 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 GLIPR2Q9H4G4 154 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 LIN28AQ9H9Z2 209 aaKnown RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 PLGRKTQ9HBL7 147 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 HHATLQ9HCP6 504 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 HMG20AQ9NP66 347 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 ZCCHC3Q9NUD5 404 aaKnown RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 ACER3Q9NUN7 267 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 MED17Q9NVC6 651 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 C14orf105Q9NVL8 296 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 CHCHD3Q9NX63 227 aaKnown RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 IL36RNQ9UBH0 155 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 WARS2Q9UGM6 360 aaKnown RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 CIDEBQ9UHD4 219 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 ZNF580Q9UK33 172 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 FBXO9Q9UK97 447 aaPredicted RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 CES1P1Q9UKY3 287 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 ABCG2Q9UNQ0 655 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 CFL2Q9Y281 166 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 ERGIC3Q9Y282 383 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 NAALAD2Q9Y3Q0 740 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 RPL36Q9Y3U8 105 aaKnown RBP2.77□□□□□ -1.97
SPG11-225ENST00000561391 ATG4BQ9Y4P1 393 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 LYVE1Q9Y5Y7 322 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 DNAH1Q9P2D7 4330 aa2.77□□□□□ -1.97
SPG11-225ENST00000561391 IGHV4-61A0A0C4DH41 118 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 PNMA8CA0A1B0GUJ8 204 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 hDV102S1A0JD36 115 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 SH3PXD2BA1X283 911 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 LRP5LA4QPB2 252 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 KRT87PA6NCN2 255 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 SAGE2PA6NJ88 616 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 WASHC1A8K0Z3 465 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 A8MUA0 341 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 H0YGG7 62 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 H0YIG0 161 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 H3BMQ9 156 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 RTCAO00442 366 aaKnown RBP2.76□□□□□ -1.97
SPG11-225ENST00000561391 HAT1O14929 419 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 PGRMC2O15173 223 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 ZIC3O60481 467 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 PLOD3O60568 738 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 CTSVO60911 334 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 CTNSO60931 367 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 STX11O75558 287 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 GCM2O75603 506 aaPredicted RBP2.76□□□□□ -1.97
SPG11-225ENST00000561391 ERAL1O75616 437 aaKnown RBP2.76□□□□□ -1.97
SPG11-225ENST00000561391 TRAPPC6AO75865 159 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 CLPXO76031 633 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 NKX2-2O95096 273 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 NDUFB4O95168 129 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 OR5F1O95221 314 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 AIFM1O95831 613 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 CLIC3O95833 236 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 BCHEP06276 602 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 CDK1P06493 297 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 ALOX5P09917 674 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 OR12D1P0DN82 309 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 CPMP14384 443 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 TBXA2RP21731 343 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 CBLP22681 906 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 OMGP23515 440 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 ELK4P28324 431 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 C21orf33P30042 268 aaPredicted RBP2.76□□□□□ -1.97
SPG11-225ENST00000561391 PEBP1P30086 187 aaKnown RBP2.76□□□□□ -1.97
SPG11-225ENST00000561391 LCN1P31025 176 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 HOXD3P31249 432 aaPredicted RBP2.76□□□□□ -1.97
SPG11-225ENST00000561391 CDAP32320 146 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 SOX6P35712 828 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 CDKN2AP42771 156 aaKnown RBP2.76□□□□□ -1.97
SPG11-225ENST00000561391 OR1E2P47887 323 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 IDH2P48735 452 aaKnown RBP2.76□□□□□ -1.97
SPG11-225ENST00000561391 CRISP1P54107 249 aa2.76□□□□□ -1.97
SPG11-225ENST00000561391 LIM2P55344 173 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms