RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 BTNL3Q6UXE8 466 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 FAM122BQ7Z309 247 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 FANK1Q8TC84 345 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 POP5Q969H6 163 aaKnown RBP10.64□□□□□ -0.71
SNX1-209ENST00000559961 PYURFQ96I23 114 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 PLEKHA8Q96JA3 519 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 OR2V2Q96R30 315 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 GPX7Q96SL4 187 aaPredicted RBP10.64□□□□□ -0.71
SNX1-209ENST00000559961 IFT27Q9BW83 186 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 TMPRSS13Q9BYE2 586 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 NUAK2Q9H093 628 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 SRA1Q9HD15 236 aaKnown RBP10.64□□□□□ -0.71
SNX1-209ENST00000559961 NDE1Q9NXR1 346 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 PTTG3PQ9NZH4 202 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 GMPR2Q9P2T1 348 aaKnown RBP10.64□□□□□ -0.71
SNX1-209ENST00000559961 IL20RAQ9UHF4 553 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 AUP1Q9Y679 476 aa10.64□□□□□ -0.71
SNX1-209ENST00000559961 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.63□□□□□ -0.716e-10■■■■□ 24.5
SNX1-209ENST00000559961 IDH3BO43837 385 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 PRSS23O95084 383 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 SCG5P05408 212 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 ZNF823P16415 610 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 ADRA2CP18825 462 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 OMPP47874 163 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 FHL1Q13642 323 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 KCNMB1Q16558 191 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 RFX4Q33E94 735 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 SAMD4BQ5PRF9 694 aaKnown RBP10.63□□□□□ -0.71
SNX1-209ENST00000559961 LEG1Q6P5S2 330 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 NLRC3Q7RTR2 1065 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 LRRC28Q86X40 367 aaPredicted RBP10.63□□□□□ -0.71
SNX1-209ENST00000559961 OR5AS1Q8N127 324 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 OR8G5Q8NG78 346 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 OR11L1Q8NGX0 322 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 ITLN1Q8WWA0 313 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 NSMCE2Q96MF7 247 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 PITX2Q99697 317 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 COQ7Q99807 217 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 GORASP2Q9H8Y8 452 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 PATZ1Q9HBE1 687 aaKnown RBP10.63□□□□□ -0.71
SNX1-209ENST00000559961 TMEM100Q9NV29 134 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 ABCD2Q9UBJ2 740 aa10.63□□□□□ -0.71
SNX1-209ENST00000559961 TRBV4-1A0A0J9YWV2 114 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 RER1O15258 196 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 DIRAS1O95057 198 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 PPP1R3DO95685 299 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 TXNDC12O95881 172 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 IGHV2-70P01814 119 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 FABP3P05413 133 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 RRM2P31350 389 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 MNAT1P51948 309 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 TPTEP56180 551 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 OR2T2Q6IF00 324 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 C8orf82Q6P1X6 216 aaPredicted RBP10.62□□□□□ -0.71
SNX1-209ENST00000559961 C16orf89Q6UX73 402 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 FBXW12Q6X9E4 464 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 LINC00471Q8N535 108 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 RNF148Q8N7C7 305 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 ZNF283Q8N7M2 679 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 OR52L1Q8NGH7 329 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 GNPDA2Q8TDQ7 276 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 SPRYD4Q8WW59 207 aaPredicted RBP10.62□□□□□ -0.71
SNX1-209ENST00000559961 SPTSSAQ969W0 71 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 SLC6A7Q99884 636 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 ZNF446Q9NWS9 450 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 MIOXQ9UGB7 285 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 B9D1Q9UPM9 204 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 V9GYQ6 96 aa10.62□□□□□ -0.71
SNX1-209ENST00000559961 F5H5K5 113 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 ATP8B1O43520 1251 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 KRT36O76013 467 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 LCATP04180 440 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 RPS2P15880 293 aaKnown RBP10.61□□□□□ -0.71
SNX1-209ENST00000559961 FUT4P22083 530 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 FPR3P25089 353 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 CFPP27918 469 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 CDKN2AP42771 156 aaKnown RBP10.61□□□□□ -0.71
SNX1-209ENST00000559961 HLXQ14774 488 aaPredicted RBP10.61□□□□□ -0.71
SNX1-209ENST00000559961 TAF13Q15543 124 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 CCDC92Q53HC0 331 aaPredicted RBP10.61□□□□□ -0.71
SNX1-209ENST00000559961 RPL13AP3Q6NVV1 102 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 SEMA6DQ8NFY4 1073 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 OR4C15Q8NGM1 316 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 OR4K13Q8NH42 304 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 SGMS2Q8NHU3 365 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 SLC7A6Q92536 515 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 C7orf34Q96L11 122 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 NMNAT3Q96T66 252 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 MS4A7Q9GZW8 240 aaPredicted RBP10.61□□□□□ -0.71
SNX1-209ENST00000559961 SLC22A4Q9H015 551 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 OR52D1Q9H346 318 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 ZMAT3Q9HA38 289 aaKnown RBP10.61□□□□□ -0.71
SNX1-209ENST00000559961 GCM1Q9NP62 436 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 RPRD1BQ9NQG5 326 aaKnown RBP10.61□□□□□ -0.71
SNX1-209ENST00000559961 KIF17Q9P2E2 1029 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 KCNG2Q9UJ96 466 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 NUP50Q9UKX7 468 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 LRCH1Q9Y2L9 728 aa10.61□□□□□ -0.71
SNX1-209ENST00000559961 TMEM89A2RUT3 159 aa10.6□□□□□ -0.71
SNX1-209ENST00000559961 TMEM178BH3BS89 294 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms