RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 FOXF1Q12946 379 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 PRSS42Q7Z5A4 293 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 ADGRE4PQ86SQ3 457 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 FAM219AQ8IW50 185 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 ZBTB44Q8NCP5 570 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 STT3BQ8TCJ2 826 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 C5orf34Q96MH7 638 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 NPIPA1Q9UND3 350 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 RHBDD3Q9Y3P4 386 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 A0A1B0GX78 115 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 HMSDA8MTL9 139 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 LDLRAD4O15165 306 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 PIAS2O75928 621 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 GNB3P16520 340 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 CFPP27918 469 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 ACTBP60709 375 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 ACTG1P63261 375 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 CDNFQ49AH0 187 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 PTCRAQ6ISU1 281 aaPredicted RBP11.49□□□□□ -0.57
LDLR-207ENST00000558013 OGFOD3Q6PK18 319 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 COX15Q7KZN9 410 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 ZNF248Q8NDW4 579 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 OR10S1Q8NGN2 331 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 OR1S1Q8NH92 325 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 GDF2Q9UK05 429 aaPredicted RBP11.49□□□□□ -0.57
LDLR-207ENST00000558013 RAB27BO00194 218 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 ZNF217O75362 1048 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 PRKACBP22694 351 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 CRABP1P29762 137 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 AVPR2P30518 371 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 BIDP55957 195 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 CXADRP78310 365 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 HSF1Q00613 529 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 TMEM81Q6P7N7 255 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 ZNF546Q86UE3 836 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 FJX1Q86VR8 437 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.49□□□□□ -0.57
LDLR-207ENST00000558013 D2HGDHQ8N465 521 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 OR13C9Q8NGT0 318 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 C11orf40Q8WZ69 217 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 ZNF501Q96CX3 271 aaPredicted RBP11.49□□□□□ -0.57
LDLR-207ENST00000558013 ZNF75AQ96N20 296 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 KCNK17Q96T54 332 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 NICN1Q9BSH3 213 aa11.49□□□□□ -0.57
LDLR-207ENST00000558013 FAM25EA8MYX2 175 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 HLA-AP01891 365 aaKnown RBP11.48□□□□□ -0.57
LDLR-207ENST00000558013 TTRP02766 147 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 H2BFMP0C1H6 154 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 BCKDHBP21953 392 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 PTGS2P35354 604 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 NXPH1P58417 271 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 GK2Q14410 553 aaPredicted RBP11.48□□□□□ -0.57
LDLR-207ENST00000558013 TAF13Q15543 124 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 RSPO4Q2I0M5 234 aaPredicted RBP11.48□□□□□ -0.57
LDLR-207ENST00000558013 CARD17Q5XLA6 110 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 LYPD6Q86Y78 171 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 SCARB1Q8WTV0 552 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 ZC3H10Q96K80 434 aaKnown RBP11.48□□□□□ -0.57
LDLR-207ENST00000558013 CST11Q9H112 138 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 PLEKHA6Q9Y2H5 1048 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 ZNF814B7Z6K7 855 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 B3GALNT1O75752 331 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 MPGP29372 298 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 NUP62P37198 522 aaPredicted RBP11.48□□□□□ -0.57
LDLR-207ENST00000558013 PRKXP51817 358 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 PAPD4Q6PIY7 484 aaKnown RBP11.48□□□□□ -0.57
LDLR-207ENST00000558013 CFAP77Q6ZQR2 320 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 H1FNTQ75WM6 255 aaPredicted RBP11.48□□□□□ -0.57
LDLR-207ENST00000558013 BEST3Q8N1M1 668 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 TMEM229BQ8NBD8 167 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 ST8SIA4Q92187 359 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 MVB12AQ96EY5 273 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 POTEKPQ9BYX7 375 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 C1orf198Q9H425 327 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 NOP16Q9Y3C1 178 aaKnown RBP11.48□□□□□ -0.57
LDLR-207ENST00000558013 RALGAPA1Q6GYQ0 2036 aa11.48□□□□□ -0.57
LDLR-207ENST00000558013 A0A1W2PNR3 127 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 A0A1W2PP11 408 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 OR5H14A6NHG9 310 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 HSPB2A8KAH6 182 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 H3BUI4 141 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 OR2T1O43869 369 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 GDF9O60383 454 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 RAMP1O60894 148 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 ABOP16442 354 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 ATF4P18848 351 aaPredicted RBP11.47□□□□□ -0.57
LDLR-207ENST00000558013 TDGQ13569 410 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 HSPB2Q16082 182 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 ATRAIDQ6UW56 229 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 ZNF813Q6ZN06 617 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 TRAPPC6BQ86SZ2 158 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 ADAD2Q8NCV1 583 aaKnown RBP11.47□□□□□ -0.57
LDLR-207ENST00000558013 CASTOR1Q8WTX7 329 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 ZNF576Q9H609 170 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 AKIRIN1Q9H9L7 192 aaPredicted RBP11.47□□□□□ -0.57
LDLR-207ENST00000558013 SEC61A2Q9H9S3 476 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 OR14I1A6ND48 311 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 TMEM200CA6NKL6 621 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 C4BPBP20851 252 aa11.47□□□□□ -0.57
LDLR-207ENST00000558013 PPP1R1AQ13522 171 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms