RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 SLAMF6Q96DU3 332 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 HRASLS5Q96KN8 279 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 TEAD3Q99594 435 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 COPS4Q9BT78 406 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 POFUT1Q9H488 388 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 DCLRE1BQ9H816 532 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 H2AFY2Q9P0M6 372 aaPredicted RBP12.33□□□□□ -0.44
USP3-205ENST00000557884 MYEF2Q9P2K5 600 aaKnown RBP12.33□□□□□ -0.44
USP3-205ENST00000557884 ATPIF1Q9UII2 106 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 DUSP13Q9UII6 198 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 GMPPBQ9Y5P6 360 aa12.33□□□□□ -0.44
USP3-205ENST00000557884 RAI1Q7Z5J4 1906 aaPredicted RBP12.33□□□□□ -0.44
USP3-205ENST00000557884 TMEM129A0AVI4 362 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 E9PQ18 207 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 NDUFS7O75251 213 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 CLPTM1O96005 669 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 HCCSP53701 268 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 ATP5J2P56134 94 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 PPP1CBP62140 327 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 ECH1Q13011 328 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 MAD2L1BPQ15013 274 aaPredicted RBP12.32□□□□□ -0.44
USP3-205ENST00000557884 TAF13Q15543 124 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 EFNB3Q15768 340 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 RSPO1Q2MKA7 263 aaPredicted RBP12.32□□□□□ -0.44
USP3-205ENST00000557884 ALKBH6Q3KRA9 238 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 NXNL2Q5VZ03 156 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 ARL9Q6T311 187 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 GID4Q8IVV7 300 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 OR8J1Q8NGP2 316 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 ST7LQ8TDW4 575 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 AMELYQ99218 206 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 FOXC2Q99958 501 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 ABHD6Q9BV23 337 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 OR2J1Q9GZK6 312 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 ELOVL3Q9HB03 270 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 ZNF701Q9NV72 531 aaPredicted RBP12.32□□□□□ -0.44
USP3-205ENST00000557884 SMPD3Q9NY59 655 aaPredicted RBP12.32□□□□□ -0.44
USP3-205ENST00000557884 AASSQ9UDR5 926 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 KLHDC2Q9Y2U9 406 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 CREBBPQ92793 2442 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 CELSR1Q9NYQ6 3014 aa12.32□□□□□ -0.44
USP3-205ENST00000557884 LOC100130705A0A1B0GUX0 176 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 A0A1W2PPW3 197 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 SLC22A31A6NKX4 558 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 DLGAP1O14490 977 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 APOL3O95236 402 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 MPV17P39210 176 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 ALDH3B1P43353 468 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 KRTAP27-1Q3LI81 207 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 OGFRL1Q5TC84 451 aaPredicted RBP12.31□□□□□ -0.44
USP3-205ENST00000557884 SHFQ7M4L6 423 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 SLC16A9Q7RTY1 509 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 ZCCHC24Q8N2G6 241 aaKnown RBP12.31□□□□□ -0.44
USP3-205ENST00000557884 SYNPRQ8TBG9 265 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 THEM6Q8WUY1 208 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 ZNF582Q96NG8 517 aaPredicted RBP12.31□□□□□ -0.44
USP3-205ENST00000557884 CNN2Q99439 309 aaKnown RBP12.31□□□□□ -0.44
USP3-205ENST00000557884 DOK1Q99704 481 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 VRK1Q99986 396 aaPredicted RBP12.31□□□□□ -0.44
USP3-205ENST00000557884 GSX2Q9BZM3 304 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 DYNLRB1Q9NP97 96 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 DDX28Q9NUL7 540 aaKnown RBP12.31□□□□□ -0.44
USP3-205ENST00000557884 TBCCD1Q9NVR7 557 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 FAM118AQ9NWS6 357 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 STARD10Q9Y365 291 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 PMF1-BGLAPU3KQ54 211 aa12.31□□□□□ -0.44
USP3-205ENST00000557884 ZNF878C9JN71 531 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 M0R135 149 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 CASQ2O14958 399 aaPredicted RBP12.3□□□□□ -0.44
USP3-205ENST00000557884 ENTPD6O75354 484 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 IGHV4-39P01824 125 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 ADRA2AP08913 450 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 ACSM4P0C7M7 580 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 BMP4P12644 408 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 ZNF250P15622 560 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 GCH1P30793 250 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 SLC6A9P48067 706 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 PRKXP51817 358 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 TPTEP56180 551 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 KLF3P57682 345 aaPredicted RBP12.3□□□□□ -0.44
USP3-205ENST00000557884 SELENOVP59797 346 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 SLC34A1Q06495 639 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 ZNF718Q3SXZ3 478 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 Q5PR19 223 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 UNQ6126/PRO20091Q6UXV3 157 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 NAA40Q86UY6 237 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 PACRGLQ8N7B6 248 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 ZNF454Q8N9F8 522 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 OR51G2Q8NGK0 314 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 OTOSQ8NHW6 89 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 CYGBQ8WWM9 190 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 IPCEF1Q8WWN9 437 aaPredicted RBP12.3□□□□□ -0.44
USP3-205ENST00000557884 SPTSSAQ969W0 71 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 TRMT61AQ96FX7 289 aaKnown RBP12.3□□□□□ -0.44
USP3-205ENST00000557884 ZNF799Q96GE5 643 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 MARS2Q96GW9 593 aaKnown RBP12.3□□□□□ -0.44
USP3-205ENST00000557884 DCLRE1CQ96SD1 692 aaKnown RBP12.3□□□□□ -0.44
USP3-205ENST00000557884 TTTY10Q9BZA0 68 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 RNPEPL1Q9HAU8 725 aa12.3□□□□□ -0.44
USP3-205ENST00000557884 PTTG3PQ9NZH4 202 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms