RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PINK1Q9BXM7 581 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 MFRPQ9BY79 579 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 NEUROD4Q9HD90 331 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 TREM1Q9NP99 234 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 CSAG2Q9Y5P2 127 aa6.88□□□□□ -1.31
LIMA1-216ENST00000552909 ZC3H12DA2A288 527 aaKnown RBP6.87□□□□□ -1.31
LIMA1-216ENST00000552909 OR6C76A6NM76 312 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 LDB3O75112 727 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 ACTL6AO96019 429 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 GKN3PP0CG01 181 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 NT5EP21589 574 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 PAX6P26367 422 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 PTH2RP49190 550 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 PPT1P50897 306 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 P2RY4P51582 365 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 PNLIPRP2P54317 469 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 PRKAG1P54619 331 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 SKP1P63208 163 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 DUSP2Q05923 314 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 MLC1Q15049 377 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 C4orf46Q504U0 113 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 KLHL26Q53HC5 615 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 FAM76BQ5HYJ3 339 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 C9orf152Q5JTZ5 239 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 DMKNQ6E0U4 476 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-216ENST00000552909 BEND4Q6ZU67 534 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 SZRD1Q7Z422 152 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 RNF113BQ8IZP6 322 aaKnown RBP6.87□□□□□ -1.31
LIMA1-216ENST00000552909 BEST3Q8N1M1 668 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 RBMXL3Q8N7X1 1067 aaKnown RBP6.87□□□□□ -1.31
LIMA1-216ENST00000552909 C15orf54Q8N8G6 183 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 STK35Q8TDR2 534 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 ACOT11Q8WXI4 607 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-216ENST00000552909 SLC25A38Q96DW6 304 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 GAL3ST1Q99999 423 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF700Q9H0M5 742 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 WDR13Q9H1Z4 485 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 SIRT3Q9NTG7 399 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-216ENST00000552909 TREM2Q9NZC2 230 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 LUZP4Q9P127 313 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 IL20RAQ9UHF4 553 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 FOXJ3Q9UPW0 622 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 NINQ8N4C6 2090 aa6.87□□□□□ -1.31
LIMA1-216ENST00000552909 IGKV3D-11A0A0A0MRZ8 115 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SYT5O00445 386 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 GPR37O15354 613 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 CLN5O75503 358 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 EPPINO95925 133 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 RD3LP0DJH9 198 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 PRG2P13727 222 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF44P15621 663 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 PYCR1P32322 319 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 GPR4P46093 362 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 RAB38P57729 211 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 ST3GAL3Q11203 375 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 CBFBQ13951 182 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 GLT8D1Q68CQ7 371 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF813Q6ZN06 617 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF620Q6ZNG0 422 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 HMGN2P46Q86SG4 172 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF561Q8N587 486 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 OR9A2Q8NGT5 310 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 BBS10Q8TAM1 723 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SUN3Q8TAQ9 357 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 DOK4Q8TEW6 326 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 XAGE5Q8WWM1 108 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 EGLN1Q9GZT9 426 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 NRIP3Q9NQ35 241 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 POLE3Q9NRF9 147 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SMCO4Q9NRQ5 59 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 UQCC1Q9NVA1 299 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 TNFSF18Q9UNG2 199 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 UTP20O75691 2785 aaKnown RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 PRAMEF27A3QJZ7 478 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 CDHR4A6H8M9 788 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SLC22A31A6NKX4 558 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 FGF16O43320 207 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 FGF17O60258 216 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 FADS1O60427 444 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 GPR75O95800 540 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 F10P00742 488 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 MRPL3P09001 348 aaKnown RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 MUC1P15941 1255 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SLC16A1P53985 500 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 OR12D2P58182 307 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 RAB2AP61019 212 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 EEF1A1P68104 462 aaKnown RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SRSF3P84103 164 aaKnown RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF311Q5JNZ3 666 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 EEF1A1P5Q5VTE0 462 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 PAPD4Q6PIY7 484 aaKnown RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 LINC00696Q6ZRV3 163 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 FCRLAQ7L513 359 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 TMEM200AQ86VY9 491 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 LRRC25Q8N386 305 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 GTPBP8Q8N3Z3 284 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-216ENST00000552909 ZNF565Q8N9K5 539 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 OR5J2Q8NH18 312 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 SYNPRQ8TBG9 265 aa6.86□□□□□ -1.31
LIMA1-216ENST00000552909 PAQR8Q8TEZ7 354 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms