RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 TUBG1P23258 451 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 IL32P24001 234 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 EEF1B2P24534 225 aaKnown RBP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 RPS27P42677 84 aaKnown RBP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 ALDH3B2P48448 385 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 CDH15P55291 814 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 TAS2R43P59537 309 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 UBE2NP61088 152 aaKnown RBP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 PIGFQ07326 219 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 SRSF1Q07955 248 aaKnown RBP eCLIP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 MLLT11Q13015 90 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 TPBGQ13641 420 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 SPHARQ15513 63 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 HIKESHIQ53FT3 197 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 C9orf135Q5VTT2 229 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 LIPNQ5VXI9 398 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 CORO6Q6QEF8 472 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 KRT74Q7RTS7 529 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 LINC00346Q8IVM7 164 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 C1orf174Q8IYL3 243 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 RFLNBQ8N5W9 214 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 CPEB3Q8NE35 698 aaKnown RBP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 OR1F12Q8NHA8 337 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 THEM6Q8WUY1 208 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 S100PBPQ96BU1 408 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 COG8Q96MW5 612 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 ACTR6Q9GZN1 396 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 TUBG2Q9NRH3 451 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 SLCO1C1Q9NYB5 712 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 PLEK2Q9NYT0 353 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 KLF2Q9Y5W3 355 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-211ENST00000552338 SNX5Q9Y5X3 404 aa8.33□□□□□ -1.08
LIMA1-211ENST00000552338 CFAP46Q8IYW2 2715 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 DOK2O60496 412 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 ZG16O60844 167 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 SEC14L2O76054 403 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 GOSR1O95249 250 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 IGLV3-1P01715 115 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 HLA-HP01893 362 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 MT-ND5P03915 603 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 KRT8P05787 483 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF35P13682 527 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 PLA2G2AP14555 144 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 PCSK6P29122 969 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 RIDAP52758 137 aaKnown RBP8.32□□□□□ -1.08
LIMA1-211ENST00000552338 OR12D2P58182 307 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 PLP2Q04941 152 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 TAB1Q15750 504 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 PABPC1L2AQ5JQF8 200 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 OR2G6Q5TZ20 316 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 DMKNQ6E0U4 476 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-211ENST00000552338 DRAM2Q6UX65 266 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 C22orf34Q6ZV56 151 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 ZNF367Q7RTV3 350 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 KRT77Q7Z794 578 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 MDP1Q86V88 176 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 SMAP2Q8WU79 429 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-211ENST00000552338 SNX33Q8WV41 574 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 SPRYD4Q8WW59 207 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-211ENST00000552338 HTRA1Q92743 480 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 MUL1Q969V5 352 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 MUCL1Q96DR8 90 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 C4orf36Q96KX1 117 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 DACH2Q96NX9 599 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 OR5M11Q96RB7 305 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 TBX5Q99593 518 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 C1QTNF5Q9BXJ0 243 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 MOB1AQ9H8S9 216 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 ISG20L2Q9H9L3 353 aaKnown RBP8.32□□□□□ -1.08
LIMA1-211ENST00000552338 ELOVL3Q9HB03 270 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 NOX3Q9HBY0 568 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 G6PC2Q9NQR9 355 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 TBCCD1Q9NVR7 557 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 FAM206AQ9NX38 181 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 ST6GALNAC2Q9UJ37 374 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 POLR1DQ9Y2S0 133 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 LRP12Q9Y561 859 aa8.32□□□□□ -1.08
LIMA1-211ENST00000552338 LOC100509620A0A075B734 347 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 IQCMA0A1B0GVH7 501 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 MYL12BO14950 172 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 CLPTM1O96005 669 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 PNPP00491 289 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 LALBAP00709 142 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 ISG15P05161 165 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 THBDP07204 575 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 H2BFMP0C1H6 154 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 ACSM4P0C7M7 580 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 PATE4P0C8F1 98 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 CPEP16870 476 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 GALP22466 123 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 STOMP27105 288 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 HOXC12P31275 282 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 TTKP33981 857 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 RPL5P46777 297 aaKnown RBP8.31□□□□□ -1.08
LIMA1-211ENST00000552338 RGS6P49758 472 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 GBX2P52951 348 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-211ENST00000552338 NR1H2P55055 460 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 PSMA6P60900 246 aaKnown RBP8.31□□□□□ -1.08
LIMA1-211ENST00000552338 DOC2BQ14184 412 aa8.31□□□□□ -1.08
LIMA1-211ENST00000552338 CDK5R1Q15078 307 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms