RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MTHFD2LQ9H903 347 aaPredicted RBP3.9□□□□□ -1.79
LIMS1-214ENST00000542845 A4GALTQ9NPC4 353 aa3.9□□□□□ -1.79
LIMS1-214ENST00000542845 SIRT7Q9NRC8 400 aa3.9□□□□□ -1.79
LIMS1-214ENST00000542845 TMEM38BQ9NVV0 291 aa3.9□□□□□ -1.79
LIMS1-214ENST00000542845 GLTPQ9NZD2 209 aa3.9□□□□□ -1.79
LIMS1-214ENST00000542845 ERVK-18Q9QC07 812 aa3.9□□□□□ -1.79
LIMS1-214ENST00000542845 MARCOQ9UEW3 520 aaPredicted RBP3.9□□□□□ -1.79
LIMS1-214ENST00000542845 EXOC1LA0A1B0GW35 172 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 A0A1B0GW55 424 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 LRRN3E7EW58 273 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 F5H5P2 479 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 HMGN4O00479 90 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 AZIN1O14977 448 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 NPFFO15130 113 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ADAM20O43506 726 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 OR10H3O60404 316 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 NPIPB7O75200 414 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ZFPL1O95159 310 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 OR6A2O95222 327 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DUS4LO95620 317 aaKnown RBP3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DUX4L2P0CJ85 424 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DUX4L3P0CJ86 424 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DUX4L5P0CJ88 424 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DUX4L6P0CJ89 424 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DUX4L7P0CJ90 424 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ADORA3P0DMS8 318 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 MYL2P10916 166 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ZNF32P17041 273 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 PRPH2P23942 346 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 CDAP32320 146 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 PAFAH1B1P43034 410 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 MAGEA12P43365 314 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 SERPINB9P50453 376 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ZNF84P51523 738 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 CLRN1P58418 232 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 RPS16P62249 146 aaKnown RBP3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ERVK-25P63136 954 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 PUDPQ08623 228 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 KCNMB1Q16558 191 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 AP1ARQ63HQ0 302 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DUX4L9Q6RFH8 374 aaPredicted RBP3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ARL9Q6T311 187 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ZNF836Q6ZNA1 936 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DCDC5Q6ZRR9 648 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 SLC35D2Q76EJ3 337 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 BTN2A1Q7KYR7 527 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 SERPINA11Q86U17 422 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 NUDCD3Q8IVD9 361 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 PEX5LQ8IYB4 626 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 C1orf87Q8N0U7 546 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 CLIP4Q8N3C7 705 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 NATD1Q8N6N6 113 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 CCDC63Q8NA47 563 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 FNDC5Q8NAU1 212 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 PAPD5Q8NDF8 572 aaKnown RBP3.89□□□□□ -1.79
LIMS1-214ENST00000542845 AGR3Q8TD06 166 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 OIT3Q8WWZ8 545 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ST8SIA4Q92187 359 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 TMEM54Q969K7 222 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 COQ8BQ96D53 544 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 POM121L2Q96KW2 1035 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 FCRL1Q96LA6 429 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 C4orf45Q96LM5 186 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 RCHY1Q96PM5 261 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 PRR25Q96S07 402 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 PAFAH2Q99487 392 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DDOQ99489 341 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 C1orf43Q9BWL3 253 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 TUBB1Q9H4B7 451 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 ELOVL3Q9HB03 270 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 NANSQ9NR45 359 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 INPP5EQ9NRR6 644 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 MAN2C1Q9NTJ4 1040 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 UFSP2Q9NUQ7 469 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 DUX4Q9UBX2 424 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 TBK1Q9UHD2 729 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 TMCC3Q9ULS5 477 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 TMED5Q9Y3A6 229 aa3.89□□□□□ -1.79
LIMS1-214ENST00000542845 TRAV36DV7A0A075B6V5 113 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 LOC102725191A0A1B0GVB3 256 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 TCRBV4S1A1TA0A5B7 111 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 CDHR4A6H8M9 788 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 TMEM233B4DJY2 109 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 IFNL4K9M1U5 179 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 RNF13O43567 381 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 GLRA3O75311 464 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 CLIC3O95833 236 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 SNRPAP09012 282 aaKnown RBP3.88□□□□□ -1.79
LIMS1-214ENST00000542845 MMP7P09237 267 aaPredicted RBP3.88□□□□□ -1.79
LIMS1-214ENST00000542845 NEFHP12036 1026 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 GYPEP15421 78 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 TCP1P17987 556 aaKnown RBP3.88□□□□□ -1.79
LIMS1-214ENST00000542845 GSTM3P21266 225 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 CPT2P23786 658 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 SAA4P35542 130 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 PMELP40967 661 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 SRP9P49458 86 aaKnown RBP3.88□□□□□ -1.79
LIMS1-214ENST00000542845 NPY4RP50391 375 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 ERFP50548 548 aa3.88□□□□□ -1.79
LIMS1-214ENST00000542845 BMXP51813 675 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms