RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ZNF319Q9P2F9 582 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 KLK11Q9UBX7 282 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 STEAP1Q9UHE8 339 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 SLC5A6Q9Y289 635 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 FRYQ5TBA9 3013 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 ARGFXA6NJG6 315 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 CCNKO75909 580 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 CD2P06729 351 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 GNALP38405 381 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 MAGEA5P43359 124 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 POU3F4P49335 361 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 ART1P52961 327 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 RAC3P60763 192 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 TMEM69Q5SWH9 247 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 HDDC2Q7Z4H3 204 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 BIVMQ86UB2 503 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 TMEM123Q8N131 208 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 TOMM5Q8N4H5 51 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 OR51E1Q8TCB6 317 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 ABHD3Q8WU67 409 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLIP1-216ENST00000541410 NUFIP1Q9UHK0 495 aaKnown RBP12.84□□□□□ -0.35
CLIP1-216ENST00000541410 FOXJ3Q9UPW0 622 aa12.84□□□□□ -0.35
CLIP1-216ENST00000541410 TRAV6A0A075B6T7 132 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 OR5H15A6NDH6 313 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 GJE1A6NN92 205 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF878C9JN71 531 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 KDM4BO94953 1096 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 IGHV3-9P01782 118 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 MT-ND4P03905 459 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 ITGB2P05107 769 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 MMP15P51511 669 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 MMP16P51512 607 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF121P58317 390 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-216ENST00000541410 TATDN3Q17R31 274 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 GLYATL3Q5SZD4 288 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 JAGN1Q8N5M9 183 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 CLEC1AQ8NC01 280 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 OR52I2Q8NH67 350 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 S100A16Q96FQ6 103 aaKnown RBP12.83□□□□□ -0.36
CLIP1-216ENST00000541410 ALKBH3Q96Q83 286 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-216ENST00000541410 PNRC2Q9NPJ4 139 aaKnown RBP12.83□□□□□ -0.36
CLIP1-216ENST00000541410 CACNG2Q9Y698 323 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 E9PLN8 166 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 BTCP35070 178 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 CASRP41180 1078 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 PTH2RP49190 550 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 CCR6P51684 374 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 C2orf76Q3KRA6 126 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 OR10K2Q6IF99 312 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 DEGS2Q6QHC5 323 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 GALNTL5Q7Z4T8 443 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 ADAT3Q96EY9 351 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-216ENST00000541410 DMRTB1Q96MA1 342 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 ULBP2Q9BZM5 246 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 SLC6A15Q9H2J7 730 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 CKLFQ9UBR5 152 aa12.83□□□□□ -0.36
CLIP1-216ENST00000541410 BOKQ9UMX3 212 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-216ENST00000541410 F5H5K5 113 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 SYT7O43581 403 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 ORC5O43913 435 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 VAMP5O95183 116 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 CALCBP10092 127 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 CSRP1P21291 193 aaKnown RBP12.82□□□□□ -0.36
CLIP1-216ENST00000541410 GDNFP39905 211 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 GUCA1AP43080 201 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-216ENST00000541410 PITPNAQ00169 270 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 TCF15Q12870 199 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 AIMP2Q13155 320 aaKnown RBP12.82□□□□□ -0.36
CLIP1-216ENST00000541410 FAAP20Q6NZ36 180 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF704Q6ZNC4 412 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-216ENST00000541410 FAM57BQ71RH2 274 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 RNF144BQ7Z419 303 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 KCNE4Q8WWG9 221 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 TMEM54Q969K7 222 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 FAM3DQ96BQ1 224 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 SPACA5Q96QH8 159 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 FLVCR1Q9Y5Y0 555 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 SPTBN2O15020 2390 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF292O60281 2723 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 BOD1L1Q8NFC6 3051 aa12.82□□□□□ -0.36
CLIP1-216ENST00000541410 MEIS3P1A6NDR6 274 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 DHHO43323 396 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 PATE4P0C8F1 98 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ABOP16442 354 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 MSR1P21757 451 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ACHEP22303 614 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 CX3CR1P49238 355 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 GFRA1P56159 465 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 RAB11BQ15907 218 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 C3AR1Q16581 482 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ABHD12BQ7Z5M8 362 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ELMOD2Q8IZ81 293 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF283Q8N7M2 679 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 OR8B12Q8NGG6 310 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 OR2V1Q8NHB1 315 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 HAVCR1Q96D42 359 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 FAM71F1Q96KD3 344 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-216ENST00000541410 FAM173AQ9BQD7 235 aa12.81□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF703Q9H7S9 590 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms