RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PCK2Q16822 640 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 FAM209AQ5JX71 171 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 CYB5R2Q6BCY4 276 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 TMEM154Q6P9G4 183 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 CORO6Q6QEF8 472 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 ARL9Q6T311 187 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 CFAP77Q6ZQR2 320 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 COLCA1Q6ZS62 124 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 HIPK1Q86Z02 1210 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 CYB561A3Q8NBI2 242 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 OR2T33Q8NG76 320 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 GIPC3Q8TF64 312 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 SNX33Q8WV41 574 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 HPS1Q92902 700 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 MSI2Q96DH6 328 aaKnown RBP12.08□□□□□ -0.48
USP28-209ENST00000540925 NTN4Q9HB63 628 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 ZNF275Q9NSD4 429 aaPredicted RBP12.08□□□□□ -0.48
USP28-209ENST00000540925 CGGBP1Q9UFW8 167 aaPredicted RBP12.08□□□□□ -0.48
USP28-209ENST00000540925 KCNG2Q9UJ96 466 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 STARD10Q9Y365 291 aa12.08□□□□□ -0.48
USP28-209ENST00000540925 LRP5LA4QPB2 252 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 COL6A5A8TX70 2615 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 CD55P08174 381 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 ZNF16P17020 682 aaPredicted RBP12.07□□□□□ -0.48
USP28-209ENST00000540925 PYCR1P32322 319 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 LIPAP38571 399 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 CRYBB2P43320 205 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 RGS6P49758 472 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 SLC25A1P53007 311 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 TMEM33P57088 247 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 CRMP1Q14194 572 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 SLC36A3Q495N2 470 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 FBXW12Q6X9E4 464 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 SPATA24Q86W54 205 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 OR10S1Q8NGN2 331 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 OR2T4Q8NH00 348 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 HAVCR1Q96D42 359 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 MAP6Q96JE9 813 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 YAE1D1Q9NRH1 226 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 CMC2Q9NRP2 79 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 CYSLTR2Q9NS75 346 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 POLR1DQ9Y2S0 133 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 GRIP1Q9Y3R0 1128 aa12.07□□□□□ -0.48
USP28-209ENST00000540925 SPI1P17947 270 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 OTX1P32242 354 aaPredicted RBP12.06□□□□□ -0.48
USP28-209ENST00000540925 CENPAP49450 140 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 ERFP50548 548 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 ZNF81P51508 661 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 CHN2P52757 468 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 CBX1P83916 185 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 CDK5R2Q13319 367 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 LINC01590Q5TEZ4 76 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 LYPD4Q6UWN0 246 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 Q6ZR03 302 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.06□□□□□ -0.48
USP28-209ENST00000540925 LINC00346Q8IVM7 164 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 HS3ST5Q8IZT8 346 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 UTP4Q969X6 686 aaKnown RBP12.06□□□□□ -0.48
USP28-209ENST00000540925 COG8Q96MW5 612 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 C1QTNF5Q9BXJ0 243 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 DDX28Q9NUL7 540 aaKnown RBP12.06□□□□□ -0.48
USP28-209ENST00000540925 DNAJB9Q9UBS3 223 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 PURGQ9UJV8 347 aaKnown RBP12.06□□□□□ -0.48
USP28-209ENST00000540925 COMMD3-BMI1R4GMX3 469 aa12.06□□□□□ -0.48
USP28-209ENST00000540925 STAB1Q9NY15 2570 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 A0A1B0GWJ7 208 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 WNT9BO14905 357 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 MT-ND5P03915 603 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 ACSM4P0C7M7 580 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 RAC2P15153 192 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 GRK5P34947 590 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 ECH1Q13011 328 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 SPRNQ5BIV9 151 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 TEX30Q5JUR7 227 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 PROKR2Q8NFJ6 384 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 OR51L1Q8NGJ5 315 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 OR9Q1Q8NGQ5 310 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 PTP4A1Q93096 173 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 APOBEC3DQ96AK3 386 aaPredicted RBP12.05□□□□□ -0.48
USP28-209ENST00000540925 CMBLQ96DG6 245 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 DIRC2Q96SL1 478 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 ATF6BQ99941 703 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 HCAR1Q9BXC0 346 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 YY1AP1Q9H869 796 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 WDR76Q9H967 626 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 SAP30LQ9HAJ7 183 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 PDP1Q9P0J1 537 aaPredicted RBP12.05□□□□□ -0.48
USP28-209ENST00000540925 ZDHHC8Q9ULC8 765 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 CACNG2Q9Y698 323 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 TANC2Q9HCD6 1990 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 ATRQ13535 2644 aa12.05□□□□□ -0.48
USP28-209ENST00000540925 IGHV1-69-2A0A0G2JMI3 117 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 PLSCR5A0PG75 271 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 SPRY3O43610 288 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 ATP5HO75947 161 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 CLUP10909 449 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 IGFBP5P24593 272 aa12.04□□□□□ -0.48
USP28-209ENST00000540925 RPS27P42677 84 aaKnown RBP12.04□□□□□ -0.48
USP28-209ENST00000540925 GPR6P46095 362 aaPredicted RBP12.04□□□□□ -0.48
USP28-209ENST00000540925 LMO4P61968 165 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms