RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 PCGF3Q3KNV8 242 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 C2orf76Q3KRA6 126 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 TMEM176BQ3YBM2 270 aaPredicted RBP5.9□□□□□ -1.46
USP28-206ENST00000538224 C10orf128Q5T292 105 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 PRAMEF20Q5VT98 475 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 RAET1LQ5VY80 246 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 C6orf15Q6UXA7 325 aaPredicted RBP5.9□□□□□ -1.46
USP28-206ENST00000538224 NHLRC1Q6VVB1 395 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 GLDNQ6ZMI3 551 aaPredicted RBP5.9□□□□□ -1.46
USP28-206ENST00000538224 FOXL2NBQ6ZUU3 175 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 GPAT4Q86UL3 456 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 LINC00346Q8IVM7 164 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 KDM8Q8N371 416 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 SPICQ8N5J4 248 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 JAGN1Q8N5M9 183 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 MEIOBQ8N635 442 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 DTWD2Q8NBA8 298 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 TMEM229BQ8NBD8 167 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 CCDC107Q8WV48 283 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 SLC25A28Q96A46 364 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 NTNG2Q96CW9 530 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 TAAR9Q96RI9 348 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 NPAS1Q99742 590 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 SF3B5Q9BWJ5 86 aaKnown RBP5.9□□□□□ -1.46
USP28-206ENST00000538224 PBOV1Q9GZY1 135 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 ATG5Q9H1Y0 275 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 CDCP1Q9H5V8 836 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 SEC61A2Q9H9S3 476 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 NOX3Q9HBY0 568 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 ZNF160Q9HCG1 818 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 SH2D2AQ9NP31 389 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 TMEM138Q9NPI0 162 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 FBLN5Q9UBX5 448 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 ZMAT5Q9UDW3 170 aaKnown RBP5.9□□□□□ -1.46
USP28-206ENST00000538224 GDF2Q9UK05 429 aaPredicted RBP5.9□□□□□ -1.46
USP28-206ENST00000538224 FBXO9Q9UK97 447 aaPredicted RBP5.9□□□□□ -1.46
USP28-206ENST00000538224 RAB22AQ9UL26 194 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 PADI1Q9ULC6 663 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 MRPS18CQ9Y3D5 142 aaKnown RBP5.9□□□□□ -1.46
USP28-206ENST00000538224 LOXL2Q9Y4K0 774 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 NPTNQ9Y639 398 aa5.9□□□□□ -1.46
USP28-206ENST00000538224 LAMA1P25391 3075 aa5.9□□□□□ -1.47
USP28-206ENST00000538224 PRUNE2Q8WUY3 3088 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 TRAV18A0A075B6X5 111 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 A0A087WV48 116 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 IGKV1D-43A0A0B4J1Z2 117 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 A0A1W2PNR3 127 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 CIB4A0PJX0 185 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 OR2M5A3KFT3 312 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 PATE3B3GLJ2 98 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 SHISA8B8ZZ34 492 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 LINC01387J3KSC0 135 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 AGRPO00253 132 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 P2RY10O00398 339 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 CDK2AP1O14519 115 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 EIF1AYO14602 144 aaKnown RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 ARPC1BO15143 372 aaKnown RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 EFNA2O43921 213 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 ICMTO60725 284 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 STK17BO94768 372 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 WNT11O96014 354 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 CYB5AP00167 134 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 TTRP02766 147 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 MELTFP08582 738 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 QDPRP09417 244 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 GIPP09681 153 aaPredicted RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 NAT2P11245 290 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 CCL4P13236 92 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 GTF2F2P13984 249 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 FOSL1P15407 271 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 TBPP20226 339 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 MSR1P21757 451 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 CTSSP25774 331 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 VEGFCP49767 419 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 RAP2BP61225 183 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 RPS15P62841 145 aaKnown RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 RAC1P63000 192 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 H3F3AP84243 136 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 CAMK2DQ13557 499 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 SSPNQ14714 243 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 MEF2DQ14814 521 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 ST3GAL2Q16842 350 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 GLYATL3Q5SZD4 288 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 PDSS1Q5T2R2 415 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 ZNF626Q68DY1 528 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 JMJD6Q6NYC1 403 aaPredicted RBP5.89□□□□□ -1.47
USP28-206ENST00000538224 STEAP1BQ6NZ63 245 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 DBX2Q6ZNG2 339 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 DOK3Q7L591 496 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 OR2W3Q7Z3T1 314 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 MDGA2Q7Z553 956 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 SLC7A5P1Q8MH63 180 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 PLPP7Q8NBV4 271 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 ZBTB44Q8NCP5 570 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 GJC3Q8NFK1 279 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 OR1M1Q8NGA1 313 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 OR11H7Q8NGC8 314 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 OR2I1PQ8NGU4 316 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 OR6N1Q8NGY5 312 aa5.89□□□□□ -1.47
USP28-206ENST00000538224 LILRB4Q8NHJ6 448 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms