RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TMEM200CA6NKL6 621 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 F5H5P2 479 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 ZNF35P13682 527 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 STARD6P59095 220 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 PMPCAQ10713 525 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 AANATQ16613 207 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 FAM69BQ5VUD6 431 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 C11orf88Q6PI97 169 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 NKD1Q969G9 470 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 TMPRSS13Q9BYE2 586 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 GSX2Q9BZM3 304 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 POFUT1Q9H488 388 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 ALKBH4Q9NXW9 302 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 HRH3Q9Y5N1 445 aa11.74□□□□□ -0.53
LDLR-203ENST00000535915 NPIPB13A6NJU9 1138 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 NPIPB4C9JG80 1138 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 MCRIP1C9JLW8 97 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 M0QYG6 137 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 TOX3O15405 576 aaPredicted RBP11.73□□□□□ -0.53
LDLR-203ENST00000535915 ARPC5O15511 151 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 EMP2P54851 167 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 SHBQ15464 509 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 SMAD2Q15796 467 aaKnown RBP11.73□□□□□ -0.53
LDLR-203ENST00000535915 MOGAT2Q3SYC2 334 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 C3P1Q6ZMU1 363 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 CHMP1BQ7LBR1 199 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 NKAIN3Q8N8D7 197 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 TMEM229BQ8NBD8 167 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 ZBTB44Q8NCP5 570 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 OR4D6Q8NGJ1 314 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 RNF133Q8WVZ7 376 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 FGGYQ96C11 551 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 SLAMF6Q96DU3 332 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 SHDQ96IW2 340 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 SERINC1Q9NRX5 453 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 UPB1Q9UBR1 384 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 B3GALT5Q9Y2C3 310 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 CYB5AP00167 134 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 OPN1LWP04000 364 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 AMY2AP04746 511 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 CD37P11049 281 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 FOSL2P15408 326 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 GNALP38405 381 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 SEC61A1P61619 476 aaKnown RBP11.73□□□□□ -0.53
LDLR-203ENST00000535915 B2MP61769 119 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 DCDP81605 110 aaKnown RBP11.73□□□□□ -0.53
LDLR-203ENST00000535915 BTN1A1Q13410 526 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 ZMYND11Q15326 602 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 KLHL24Q6TFL4 600 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 GALNT16Q8N428 558 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 ACBD4Q8NC06 268 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 OR10Z1Q8NGY1 313 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 C11orf40Q8WZ69 217 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 TINAGL1Q9GZM7 467 aaPredicted RBP11.73□□□□□ -0.53
LDLR-203ENST00000535915 METTL7AQ9H8H3 244 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 SCPEP1Q9HB40 452 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 VPS13AQ96RL7 3174 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 MED12Q93074 2177 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 FXYD6-FXYD2A0A087WZ82 144 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 A0A1W2PPL8 197 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 EFNA2O43921 213 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 SNAPC5O75971 98 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 ITGB2P05107 769 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 ACSM4P0C7M7 580 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 MMP16P51512 607 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 MYBPHQ13203 477 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 GUSBP11Q6P575 273 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 TMED4Q7Z7H5 227 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 OR5L2Q8NGL0 311 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 WDR77Q9BQA1 342 aaPredicted RBP11.73□□□□□ -0.53
LDLR-203ENST00000535915 FXYD6Q9H0Q3 95 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 TMEM185BQ9H7F4 350 aa11.73□□□□□ -0.53
LDLR-203ENST00000535915 FARSAQ9Y285 508 aaKnown RBP11.73□□□□□ -0.53
LDLR-203ENST00000535915 RPH3AQ9Y2J0 694 aaPredicted RBP11.73□□□□□ -0.53
LDLR-203ENST00000535915 LOC390937A0A1W2PQ73 354 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 TMEM82A0PJX8 343 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 LDLRAD4O15165 306 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 RGS11O94810 467 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 C1orf100Q5SVJ3 147 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 DCAF12L2Q5VW00 463 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 TSSK4Q6SA08 328 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 CCDC107Q8WV48 283 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 FOXRED1Q96CU9 486 aaPredicted RBP11.72□□□□□ -0.53
LDLR-203ENST00000535915 SLCO5A1Q9H2Y9 848 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 SDHAF3Q9NRP4 125 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 FAM206AQ9NX38 181 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 RARRES3Q9UL19 164 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 A0A0A6YYH2 397 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 TMEM235A6NFC5 223 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 A6NJ64 397 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 ZNF736B4DX44 427 aaPredicted RBP11.72□□□□□ -0.53
LDLR-203ENST00000535915 FRYLO94915 3013 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 TTRP02766 147 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 HOXD4P09016 255 aaPredicted RBP11.72□□□□□ -0.53
LDLR-203ENST00000535915 BDKRB2P30411 391 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 S100A11P31949 105 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 PLPPR5Q32ZL2 321 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 CLVS2Q5SYC1 327 aa11.72□□□□□ -0.53
LDLR-203ENST00000535915 CPEB2Q7Z5Q1 589 aaKnown RBP11.72□□□□□ -0.53
LDLR-203ENST00000535915 OR10G3Q8NGC4 313 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms