RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PTGES3Q15185 160 aaKnown RBP11.09□□□□□ -0.63
VPS28-216ENST00000533806 ZNF718Q3SXZ3 478 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 SPATA46Q5T0L3 261 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 ARL9Q6T311 187 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 CLEC2AQ6UVW9 174 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.09□□□□□ -0.63
VPS28-216ENST00000533806 ZDHHC13Q8IUH4 622 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 LINC00346Q8IVM7 164 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 PYDC1Q8WXC3 89 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 RHNO1Q9BSD3 238 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 DYNLRB1Q9NP97 96 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 DDX28Q9NUL7 540 aaKnown RBP11.09□□□□□ -0.63
VPS28-216ENST00000533806 SLCO1C1Q9NYB5 712 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 TAAR3PQ9P1P4 343 aa11.09□□□□□ -0.63
VPS28-216ENST00000533806 NDUFS8O00217 210 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 GLCEO94923 617 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 ABHD16AO95870 558 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 CSF3P09919 207 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 ACSM4P0C7M7 580 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 NAT2P11245 290 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 ZNF823P16415 610 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 ZNF23P17027 643 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 SLC2A5P22732 501 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 GIFP27352 417 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 RGS6P49758 472 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 BLVRAP53004 296 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 SELENOVP59797 346 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 PPP2R2BQ00005 443 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 ECH1Q13011 328 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 PSG7Q13046 419 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 TIGD4Q8IY51 512 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 ZNF786Q8N393 782 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 ST7LQ8TDW4 575 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 IPCEF1Q8WWN9 437 aaPredicted RBP11.08□□□□□ -0.64
VPS28-216ENST00000533806 FAM168AQ92567 244 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 HAVCR1Q96D42 359 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 PKP2Q99959 881 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 CDADC1Q9BWV3 514 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 C1QTNF5Q9BXJ0 243 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 SEMA6AQ9H2E6 1030 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 TPK1Q9H3S4 243 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 MYOZ1Q9NP98 299 aaPredicted RBP11.08□□□□□ -0.64
VPS28-216ENST00000533806 HINT3Q9NQE9 182 aaKnown RBP11.08□□□□□ -0.64
VPS28-216ENST00000533806 NKIRAS2Q9NYR9 191 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 OAZ3Q9UMX2 235 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 POLR1DQ9Y2S0 133 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 GRIP1Q9Y3R0 1128 aa11.08□□□□□ -0.64
VPS28-216ENST00000533806 A0A1W2PPW3 197 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 LOC390937A0A1W2PQ73 354 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 ZAR1LA6NP61 321 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 C17orf100A8MU93 164 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 ZNF593O00488 134 aaPredicted RBP11.07□□□□□ -0.64
VPS28-216ENST00000533806 SMAD7O15105 426 aaKnown RBP11.07□□□□□ -0.64
VPS28-216ENST00000533806 LY6G6DO95868 133 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 HPXP02790 462 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 ADH4P08319 380 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 DAOP14920 347 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 SLC25A16P16260 332 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 ENTPD1P49961 510 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 MRPS11P82912 194 aaKnown RBP11.07□□□□□ -0.64
VPS28-216ENST00000533806 LOXL1Q08397 574 aaPredicted RBP11.07□□□□□ -0.64
VPS28-216ENST00000533806 RIN1Q13671 783 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 MOGQ16653 247 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 ALKBH6Q3KRA9 238 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 SLX4IPQ5VYV7 408 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 ZFP1Q6P2D0 407 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 PLBD1Q6P4A8 553 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 FBXW12Q6X9E4 464 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 CPOQ8IVL8 374 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 ICA1LQ8NDH6 482 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 OR2AJ1Q8NGZ0 328 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 GTF3AQ92664 365 aaKnown RBP11.07□□□□□ -0.64
VPS28-216ENST00000533806 COG8Q96MW5 612 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 PITX2Q99697 317 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 CIB1Q99828 191 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 ATF6BQ99941 703 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 OSBPL10Q9BXB5 764 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 KRT84Q9NSB2 600 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 KIF17Q9P2E2 1029 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 GPR160Q9UJ42 338 aa11.07□□□□□ -0.64
VPS28-216ENST00000533806 PRR23D1E9PI22 279 aaPredicted RBP11.06□□□□□ -0.64
VPS28-216ENST00000533806 E9PQ18 207 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 PRODHO43272 600 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 NCR1O76036 304 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 ERCC1P07992 297 aaPredicted RBP11.06□□□□□ -0.64
VPS28-216ENST00000533806 PRR23D2P0DMB1 279 aaPredicted RBP11.06□□□□□ -0.64
VPS28-216ENST00000533806 KITLGP21583 273 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 PAICSP22234 425 aaKnown RBP11.06□□□□□ -0.64
VPS28-216ENST00000533806 ANOS1P23352 680 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 GSTT1P30711 240 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 GCH1P30793 250 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 POLR2IP36954 125 aaKnown RBP11.06□□□□□ -0.64
VPS28-216ENST00000533806 NR4A2P43354 598 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 MAGEB1P43366 347 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 PDLIM4P50479 330 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 NKPD1Q17RQ9 610 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 C12orf73Q69YU5 71 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 DCXRQ7Z4W1 244 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 NAA40Q86UY6 237 aa11.06□□□□□ -0.64
VPS28-216ENST00000533806 MAPK1IP1LQ8NDC0 245 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms