RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 QRICH1Q2TAL8 776 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SLC36A2Q495M3 483 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 PTPN20Q4JDL3 420 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ZNF658BQ4V348 819 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 OR2G6Q5TZ20 316 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ZNF544Q6NX49 715 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 EMBQ6PCB8 327 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 HDDC2Q7Z4H3 204 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 LRRTM1Q86UE6 522 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 THOC6Q86W42 341 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 CRLF3Q8IUI8 442 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SLC35F2Q8IXU6 374 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 CMTM8Q8IZV2 173 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SPAG16Q8N0X2 631 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SYS1Q8N2H4 156 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 MTURNQ8N3F0 131 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 Q8N402 240 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 KIR3DL3Q8N743 410 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 LRRC75AQ8NAA5 344 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 PRSS33Q8NF86 280 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 OR2T33Q8NG76 320 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 OR10W1Q8NGF6 305 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 STOML3Q8TAV4 291 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 DYNC2LI1Q8TCX1 351 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 AGAP11Q8TF27 550 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 TRUB1Q8WWH5 349 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 TAF15Q92804 592 aaKnown RBP eCLIP2.66□□□□□ -1.98
CD44-229ENST00000528672 UFD1Q92890 307 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 NAT6Q93015 286 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 TCEAL3Q969E4 200 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 FAM131CQ96AQ9 280 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 PPWD1Q96BP3 646 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 CELF6Q96J87 481 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 C9orf85Q96MD7 179 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 FOPNLQ96NB1 174 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SLC35A5Q9BS91 424 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 NIPSNAP3BQ9BS92 247 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SYT11Q9BT88 431 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 RSG1Q9BU20 258 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 MCRIP2Q9BUT9 160 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 ZNF426Q9BUY5 554 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 OCR1Q9BZK8 76 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ACTR6Q9GZN1 396 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ELOVL4Q9GZR5 314 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 TMEM38AQ9H6F2 299 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 EXOSC3Q9NQT5 275 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 SIRT7Q9NRC8 400 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 TREM2Q9NZC2 230 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 TMEM9Q9P0T7 183 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ZNF282Q9UDV7 671 aaPredicted RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 ZNF225Q9UK10 706 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 PRPF19Q9UMS4 504 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 COPS3Q9UNS2 423 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 SCML2Q9UQR0 700 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 NTNG1Q9Y2I2 539 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 AK6Q9Y3D8 172 aaKnown RBP2.66□□□□□ -1.98
CD44-229ENST00000528672 ALG5Q9Y673 324 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 ARHGAP31Q2M1Z3 1444 aa2.66□□□□□ -1.98
CD44-229ENST00000528672 CEMIPQ8WUJ3 1361 aa2.65□□□□□ -1.98
CD44-229ENST00000528672 PPIAL4EA0A075B759 164 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 IGHV3OR16-12A0A075B7B8 117 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 IGHV2-70DA0A0C4DH43 119 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 TRBV11-1A0A0K0K1C0 115 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 FAM92AA1XBS5 289 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 CCT8L1PA6NM43 557 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 DISC1C4P0D8 188 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 F5H6K3 240 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 M0QYV0 167 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 DLEU1O43261 78 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 SGCEO43556 437 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 SH3BGRLO75368 114 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 UGT2B17O75795 530 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 DIRAS1O95057 198 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 PSMG1O95456 288 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 ATP6V1G2O95670 118 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 HPP00738 406 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 IFNA10P01566 189 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 IGHG3P01860 377 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 S100A8P05109 93 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 DCNP07585 359 aaKnown RBP2.65□□□□□ -1.99
CD44-229ENST00000528672 HOXC4P09017 264 aaPredicted RBP2.65□□□□□ -1.99
CD44-229ENST00000528672 PPIAL4FP0DN26 164 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 SCGB1A1P11684 91 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 GTF2F2P13984 249 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 HLA-GP17693 338 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 OGNP20774 298 aaKnown RBP2.65□□□□□ -1.99
CD44-229ENST00000528672 SERPINA2P20848 420 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 CA5AP35218 305 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 GYG1P46976 350 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 RFX3P48380 749 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 ATP4BP51164 291 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 DUSP3P51452 185 aaPredicted RBP2.65□□□□□ -1.99
CD44-229ENST00000528672 HMGCS2P54868 508 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 CLDN18P56856 261 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 RAP1BP61224 184 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 ERVK11-1P61568 191 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 RND3P61587 244 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 LCN2P80188 198 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 VLDLRP98155 873 aa2.65□□□□□ -1.99
CD44-229ENST00000528672 TFAMQ00059 246 aaKnown RBP2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms