RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ACSM4P0C7M7 580 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 CLVS2Q5SYC1 327 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 PHF19Q5T6S3 580 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 ZNF574Q6ZN55 896 aaPredicted RBP18.93■□□□□ 0.62
VPS28-205ENST00000526204 CHMP1BQ7LBR1 199 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 ADPRHL1Q8NDY3 354 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 OR4D6Q8NGJ1 314 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 LRRC20Q8TCA0 184 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 FGGYQ96C11 551 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 OR6C1Q96RD1 312 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 GAL3ST1Q99999 423 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 DHRS9Q9BPW9 319 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 MESP1Q9BRJ9 268 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 MRPL13Q9BYD1 178 aaKnown RBP18.93■□□□□ 0.62
VPS28-205ENST00000526204 RHBDD3Q9Y3P4 386 aa18.93■□□□□ 0.62
VPS28-205ENST00000526204 EIF1AYO14602 144 aaKnown RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 PPP3CBP16298 524 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 LAP3P28838 519 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 OC90Q02509 493 aaPredicted RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 MEF2DQ14814 521 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 TMPRSS9Q7Z410 1059 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 ZNF584Q8IVC4 421 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 NAXDQ8IW45 347 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 GALNT16Q8N428 558 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 PCNPQ8WW12 178 aaKnown RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 UQCC2Q9BRT2 126 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 B3GNT4Q9C0J1 378 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 TINAGL1Q9GZM7 467 aaPredicted RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 ATXN7L1Q9ULK2 861 aaPredicted RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 FXYD6-FXYD2A0A087WZ82 144 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 M0QYG6 137 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 LMX1BO60663 402 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 SCRG1O75711 98 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 B3GALNT1O75752 331 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 SCGNO76038 276 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 ZFAND5O76080 213 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 TTRP02766 147 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 UBE2MP61081 183 aaKnown RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 SHBQ15464 509 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 PLPPR5Q32ZL2 321 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 DCAF12L2Q5VW00 463 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 CPEB2Q7Z5Q1 589 aaKnown RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 ABCA7Q8IZY2 2146 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 SLC22A24Q8N4F4 322 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 C12orf45Q8N5I9 185 aaPredicted RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 AQP3Q92482 292 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 WDR77Q9BQA1 342 aaPredicted RBP18.92■□□□□ 0.62
VPS28-205ENST00000526204 EDEM2Q9BV94 578 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 FXYD6Q9H0Q3 95 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 WNT16Q9UBV4 365 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 KCNN3Q9UGI6 736 aa18.92■□□□□ 0.62
VPS28-205ENST00000526204 UNC13CQ8NB66 2214 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 FER1L5A0AVI2 2057 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 SYT7O43581 403 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 GNALP38405 381 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 MYBPHQ13203 477 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 MOGAT2Q3SYC2 334 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 OR10K2Q6IF99 312 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 BPIFB2Q8N4F0 458 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 OR5D14Q8NGL3 314 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 EMC6Q9BV81 110 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 PBOV1Q9GZY1 135 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 ARL6Q9H0F7 186 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 TTYH1Q9H313 450 aaPredicted RBP18.91■□□□□ 0.62
VPS28-205ENST00000526204 METTL7AQ9H8H3 244 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 CNTD2Q9H8S5 307 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 RDH8Q9NYR8 311 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 B3GAT1Q9P2W7 334 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 RARRES3Q9UL19 164 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 ZSCAN5BA6NJL1 495 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 DISC1C4P0D8 188 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 EFNA2O43921 213 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 BPNT1O95861 308 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 ZNF735P0CB33 412 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 CALCRP30988 508 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 UEVLDQ8IX04 471 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 FAM46BQ96A09 425 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 DUSP23Q9BVJ7 150 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 MED9Q9NWA0 146 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 MYEF2Q9P2K5 600 aaKnown RBP18.91■□□□□ 0.62
VPS28-205ENST00000526204 MYOTQ9UBF9 498 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 WIF1Q9Y5W5 379 aa18.91■□□□□ 0.62
VPS28-205ENST00000526204 ASXL3Q9C0F0 2248 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 LOC101059948A0A1B0GTJ6 334 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 CPED1A4D0V7 1026 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 TMEM235A6NFC5 223 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 TIAF1O95411 115 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 FREM3P0C091 2139 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 ZNF260Q3ZCT1 412 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 C3orf33Q6P1S2 294 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 RHOUQ7L0Q8 258 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 TMED4Q7Z7H5 227 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 ACBD4Q8NC06 268 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 OR1M1Q8NGA1 313 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 SCARB1Q8WTV0 552 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 RBPMSQ93062 196 aaKnown RBP18.9■□□□□ 0.62
VPS28-205ENST00000526204 PRRT1Q99946 306 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 MOB1AQ9H8S9 216 aa18.9■□□□□ 0.62
VPS28-205ENST00000526204 ZMAT3Q9HA38 289 aaKnown RBP18.9■□□□□ 0.62
VPS28-205ENST00000526204 SLC2A8Q9NY64 477 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms