RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 EDIL3O43854 480 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 EIF4E2O60573 245 aaKnown RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 SNAPINO95295 136 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 AP2A1O95782 977 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 TNNC2P02585 160 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 OR1E1P30953 314 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 TSFMP43897 325 aaKnown RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 DNASE1L1P49184 302 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 SNRPD1P62314 119 aaKnown RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 CCL7P80098 99 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 C2orf80Q0P641 193 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 DPYSL3Q14195 570 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 MTF1Q14872 753 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 C3AR1Q16581 482 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 GUK1Q16774 197 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 HAGHQ16775 308 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 UPP1Q16831 310 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 KRTAP24-1Q3LI83 254 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 DDI2Q5TDH0 399 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 OR2G6Q5TZ20 316 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 PWWP2BQ6NUJ5 590 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 FAHD1Q6P587 224 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 SPESP1Q6UW49 350 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 BTNL3Q6UXE8 466 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 SLC25A48Q6ZT89 311 aaKnown RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 Q6ZVQ6 151 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 SSX7Q7RTT5 188 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 NUFIP2Q7Z417 695 aaKnown RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 SLC51BQ86UW2 128 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 KLHDC8BQ8IXV7 354 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 ENTHD1Q8IYW4 607 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 Q8N402 240 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 C2orf73Q8N5S3 287 aaPredicted RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 OR5B17Q8NGF7 314 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 OR6K2Q8NGY2 324 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 LYPD6BQ8NI32 183 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 PPTC7Q8NI37 304 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 CNIH3Q8TBE1 160 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 SPPL2AQ8TCT8 520 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 PYDC1Q8WXC3 89 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 RORBQ92753 470 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 DLX4Q92988 240 aaPredicted RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 HGDQ93099 445 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.92□□□□□ -1.78
CD44-220ENST00000525688 CXorf40BQ96DE9 158 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 CCDC126Q96EE4 140 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 FBXO17Q96EF6 278 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 CENPNQ96H22 339 aaPredicted RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 ZNF641Q96N77 438 aaPredicted RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 DUX3Q96PT4 197 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 CGREF1Q99674 301 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 LITAFQ99732 161 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 PRRT1Q99946 306 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 MICU1Q9BPX6 476 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 OVOL2Q9BRP0 275 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 BEX2Q9BXY8 128 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 ZYG11BQ9C0D3 744 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 NAA50Q9GZZ1 169 aaKnown RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 WDR13Q9H1Z4 485 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 PATZ1Q9HBE1 687 aaKnown RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 SLC25A19Q9HC21 320 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 C6orf50Q9HD87 102 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 DUS2Q9NX74 493 aaKnown RBP3.92□□□□□ -1.78
CD44-220ENST00000525688 FBXL3Q9UKT7 428 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.92□□□□□ -1.78
CD44-220ENST00000525688 PPP1R3CQ9UQK1 317 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 ZNF337Q9Y3M9 751 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 UBIAD1Q9Y5Z9 338 aa3.92□□□□□ -1.78
CD44-220ENST00000525688 SCN10AQ9Y5Y9 1956 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 IGLV3-22A0A075B6J6 115 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 A0A087X002 238 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 SLC5A10A0PJK1 596 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 PSMB11A5LHX3 300 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 M0R036 132 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 DYNC1I1O14576 645 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 SLC16A4O15374 487 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 KIAA0513O60268 411 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 ZFAND5O76080 213 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 ANGPTL1O95841 491 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 GNAO1P09471 354 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 M6PRP20645 277 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 GPR183P32249 361 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 OPRD1P41143 372 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 MAP3K8P41279 467 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 RBM34P42696 430 aaKnown RBP3.91□□□□□ -1.78
CD44-220ENST00000525688 CRISP1P54107 249 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 BTG1P62324 171 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 VLDLRP98155 873 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 PDIA2Q13087 525 aaKnown RBP3.91□□□□□ -1.78
CD44-220ENST00000525688 MAD2L1BPQ15013 274 aaPredicted RBP3.91□□□□□ -1.78
CD44-220ENST00000525688 ZNHIT3Q15649 155 aaPredicted RBP3.91□□□□□ -1.78
CD44-220ENST00000525688 TMEM30BQ3MIR4 351 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 PPM1LQ5SGD2 360 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 TIMM23BQ5SRD1 257 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 PNCKQ6P2M8 343 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 Q6ZRP5 223 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 PGAP1Q75T13 922 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 COX15Q7KZN9 410 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 CHMP1BQ7LBR1 199 aa3.91□□□□□ -1.78
CD44-220ENST00000525688 SSX6Q7RTT6 188 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms