RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PMS2P2O95744 297 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 TTRP02766 147 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 CFIP05156 583 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 ZNF43P17038 809 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 ANXA7P20073 488 aaKnown RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 GSK3AP49840 483 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 SELENOPP49908 381 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 MC2RQ01718 297 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 SPOCK1Q08629 439 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 CORO6Q6QEF8 472 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 ZNF627Q7L945 461 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 BIVMQ86UB2 503 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 GABRG1Q8N1C3 465 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 GTPBP8Q8N3Z3 284 aaPredicted RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 SLC22A24Q8N4F4 322 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 WDSUB1Q8N9V3 476 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 UXS1Q8NBZ7 420 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 RELTQ969Z4 430 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 SEH1LQ96EE3 360 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 CDX2Q99626 313 aaPredicted RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 NUDT16L1Q9BRJ7 211 aaKnown RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 MYOZ1Q9NP98 299 aaPredicted RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 FBLN5Q9UBX5 448 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 FBXL2Q9UKC9 423 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 POLR1DQ9Y2S0 133 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 HRH3Q9Y5N1 445 aa13.22□□□□□ -0.29
NUP54-217ENST00000514987 MRPS18BQ9Y676 258 aaKnown RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 CHCHD2Q9Y6H1 151 aaPredicted RBP13.22□□□□□ -0.29
NUP54-217ENST00000514987 SPTBN5Q9NRC6 3674 aaKnown RBP13.21□□□□□ -0.29
NUP54-217ENST00000514987 IGHV1-45A0A0A0MS14 117 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 TNFRSF10AO00220 468 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 NTN3O00634 580 aaPredicted RBP13.21□□□□□ -0.29
NUP54-217ENST00000514987 EIF1AYO14602 144 aaKnown RBP13.21□□□□□ -0.29
NUP54-217ENST00000514987 RGS11O94810 467 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 BPNT1O95861 308 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 IGHEP01854 428 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 CD63P08962 238 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 TDGF1P13385 188 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 ZNF81P51508 661 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 GUCA2AQ02747 115 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 PMPCAQ10713 525 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 TAF13Q15543 124 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 MPPED2Q15777 294 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 FAM189A2Q15884 450 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 HIST3H3Q16695 136 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 KIF26BQ2KJY2 2108 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 LGALSLQ3ZCW2 172 aaPredicted RBP13.21□□□□□ -0.29
NUP54-217ENST00000514987 RALGAPA1Q6GYQ0 2036 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 THOC7Q6I9Y2 204 aaKnown RBP13.21□□□□□ -0.29
NUP54-217ENST00000514987 FAAP20Q6NZ36 180 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 ZNF813Q6ZN06 617 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 ZNF680Q8NEM1 530 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 OR1M1Q8NGA1 313 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 FGGYQ96C11 551 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 IMMP1LQ96LU5 166 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 ANGPTL4Q9BY76 406 aa13.21□□□□□ -0.29
NUP54-217ENST00000514987 CGGBP1Q9UFW8 167 aaPredicted RBP13.21□□□□□ -0.29
NUP54-217ENST00000514987 GDF2Q9UK05 429 aaPredicted RBP13.21□□□□□ -0.29
NUP54-217ENST00000514987 ERVH48-1M5A8F1 160 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 SULT2B1O00204 365 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 EIF1BO60739 113 aaKnown RBP13.2□□□□□ -0.3
NUP54-217ENST00000514987 SLC22A5O76082 557 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 RAB3DO95716 219 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 CYB5AP00167 134 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 CD3DP04234 171 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 RLN1P04808 185 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 RAB3AP20336 220 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 EIF3IQ13347 325 aaKnown RBP13.2□□□□□ -0.3
NUP54-217ENST00000514987 MEF2DQ14814 521 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 ZNF529Q6P280 563 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 TMPPEQ6ZT21 453 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 PGAP1Q75T13 922 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 WDFY1Q8IWB7 410 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 FTMTQ8N4E7 242 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 OR51A2Q8NGJ7 313 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 OR51S1Q8NGJ8 323 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 MR1Q95460 341 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 FAM46BQ96A09 425 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 HEXA-AS1Q9H8Q6 139 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 SEC61A2Q9H9S3 476 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 SLC5A6Q9Y289 635 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 LHFPL6Q9Y693 200 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 PI4KAP42356 2102 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 OR2M5A3KFT3 312 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 LAMTOR5O43504 91 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 VAMP5O95183 116 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 ITGB2P05107 769 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 ZNF20P17024 532 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 GNALP38405 381 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 CLDN6P56747 220 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 TSPAN5P62079 268 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 LSM6P62312 80 aaKnown RBP13.2□□□□□ -0.3
NUP54-217ENST00000514987 GRB2P62993 217 aaKnown RBP13.2□□□□□ -0.3
NUP54-217ENST00000514987 GABREP78334 506 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 ZFP36L1Q07352 338 aaKnown RBP13.2□□□□□ -0.3
NUP54-217ENST00000514987 ZMYND11Q15326 602 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 TMEM176BQ3YBM2 270 aaPredicted RBP13.2□□□□□ -0.3
NUP54-217ENST00000514987 GPAT4Q86UL3 456 aa13.2□□□□□ -0.3
NUP54-217ENST00000514987 NAA11Q9BSU3 229 aaPredicted RBP13.2□□□□□ -0.3
NUP54-217ENST00000514987 EXO5Q9H790 373 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms