RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 COMMD3-BMI1R4GMX3 469 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 GAKO14976 1311 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 MROH7Q68CQ1 1323 aa4.89□□□□□ -1.63
NUP54-215ENST00000514313 TRBV6-6A0A0A6YYG2 114 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 IGHV3-74A0A0B4J1X5 117 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 FAM25EA8MYX2 175 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 ERI3O43414 337 aaKnown RBP4.88□□□□□ -1.63
NUP54-215ENST00000514313 CHMP2AO43633 222 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 KDELR3O43731 214 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 MPDU1O75352 247 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 GABARAPO95166 117 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 SLC25A27O95847 323 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 S100A9P06702 114 aaKnown RBP4.88□□□□□ -1.63
NUP54-215ENST00000514313 RETP07949 1114 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 TACSTD2P09758 323 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 PRPS2P11908 318 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 PTNP21246 168 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 USF1P22415 310 aaPredicted RBP4.88□□□□□ -1.63
NUP54-215ENST00000514313 WARSP23381 471 aaKnown RBP4.88□□□□□ -1.63
NUP54-215ENST00000514313 ETV1P50549 477 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 FABP6P51161 128 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 PPP1CBP62140 327 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 SLC39A6Q13433 755 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 C2orf83Q53S99 150 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 HSP90AA4PQ58FG1 418 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 MLIPQ5VWP3 458 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 ARL9Q6T311 187 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 ASCL4Q6XD76 172 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 LINC00336Q6ZUF6 198 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 ABHD12BQ7Z5M8 362 aaPredicted RBP4.88□□□□□ -1.63
NUP54-215ENST00000514313 CBR4Q8N4T8 237 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 ARIH2OSQ8N7S6 290 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 OR51L1Q8NGJ5 315 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 OR10G4Q8NGN3 311 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 TCP10LQ8TDR4 215 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 UQCC2Q9BRT2 126 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 ASB8Q9H765 288 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 ISYNA1Q9NPH2 558 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 LZTFL1Q9NQ48 299 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 CELA1Q9UNI1 258 aa4.88□□□□□ -1.63
NUP54-215ENST00000514313 IGLV11-55A0A075B6I3 123 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 PINLYPA6NC86 204 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 INS-IGF2F8WCM5 200 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 SPOPO43791 374 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 DCNP07585 359 aaKnown RBP4.87□□□□□ -1.63
NUP54-215ENST00000514313 ERGP11308 486 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 GABRG2P18507 467 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 HOXA9P31269 272 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 ZNF121P58317 390 aaPredicted RBP4.87□□□□□ -1.63
NUP54-215ENST00000514313 HERVK_113P61574 105 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 ZNF266Q14584 549 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 GINS1Q14691 196 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 PON2Q15165 354 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 RGNQ15493 299 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 AADACL4Q5VUY2 407 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 KIF2BQ8N4N8 673 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 OR6Q1Q8NGQ2 317 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 ITFG1Q8TB96 612 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 ZFP90Q8TF47 636 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 RNF138Q8WVD3 245 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 MRGPRFQ96AM1 343 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 RNF145Q96MT1 663 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 CHAC1Q9BUX1 264 aa4.87□□□□□ -1.63
NUP54-215ENST00000514313 PARP12Q9H0J9 701 aaKnown RBP4.87□□□□□ -1.63
NUP54-215ENST00000514313 TRMT112Q9UI30 125 aaKnown RBP4.87□□□□□ -1.63
NUP54-215ENST00000514313 WI2-2373I1.2A0A1W2PRP0 233 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 C11orf94C9JXX5 98 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 KLK1P06870 262 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 HOXC4P09017 264 aaPredicted RBP4.86□□□□□ -1.63
NUP54-215ENST00000514313 TPM1P09493 284 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 CD3GP09693 182 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 IL32P24001 234 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 CDH17Q12864 832 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 CAPRIN1Q14444 709 aaKnown RBP4.86□□□□□ -1.63
NUP54-215ENST00000514313 METTL21CQ5VZV1 264 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 UNC93AQ86WB7 457 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 C11orf72Q8NBR9 251 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 NTAN1Q96AB6 310 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 CFAP53Q96M91 514 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 CALN1Q9BXU9 219 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 EDA2RQ9HAV5 297 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 SLC40A1Q9NP59 571 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 ANAPC11Q9NYG5 84 aa4.86□□□□□ -1.63
NUP54-215ENST00000514313 ZNF282Q9UDV7 671 aaPredicted RBP4.86□□□□□ -1.63
NUP54-215ENST00000514313 MN1Q10571 1320 aaPredicted RBP4.86□□□□□ -1.63
NUP54-215ENST00000514313 IGHV3-66A0A0C4DH42 116 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 A0A1B0GVY2 172 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 H0Y9J4 135 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 NDUFS8O00217 210 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 SLC19A2O60779 497 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 CATP04040 527 aaKnown RBP4.85□□□□□ -1.63
NUP54-215ENST00000514313 PGA4P0DJD7 388 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 PGA3P0DJD8 388 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 PGA5P0DJD9 388 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 VSX2P58304 361 aaPredicted RBP4.85□□□□□ -1.63
NUP54-215ENST00000514313 ART3Q13508 389 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 STK38Q15208 465 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 ZNF829Q3KNS6 432 aaPredicted RBP4.85□□□□□ -1.63
NUP54-215ENST00000514313 GCSAMLQ5JQS6 135 aa4.85□□□□□ -1.63
NUP54-215ENST00000514313 TPRG1LQ5T0D9 272 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms