RNA–Protein interactions for RNA: ENST00000497960.5

NUP50-219, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 986 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-219ENST00000497960 CHD3Q12873 2000 aaKnown RBP13.13□□□□□ -0.31
NUP50-219ENST00000497960 IGLV3-9A0A075B6K5 115 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 LOC100509620A0A075B734 347 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 IGHV4-61A0A0C4DH41 118 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 SURF4O15260 269 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 ATP6V1G2O95670 118 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 CLPTM1O96005 669 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 MT-ND5P03915 603 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 IGHV4-31P0DP07 118 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 NAT2P11245 290 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 EPHA2P29317 976 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 SCRN3Q0VDG4 424 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 SNAPC1Q16533 368 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 ALKBH6Q3KRA9 238 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 ZNF718Q3SXZ3 478 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 OGFRL1Q5TC84 451 aaPredicted RBP13.13□□□□□ -0.31
NUP50-219ENST00000497960 SLX4IPQ5VYV7 408 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 ZNF774Q6NX45 483 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 TMEM154Q6P9G4 183 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 ARL9Q6T311 187 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 C1orf174Q8IYL3 243 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 PACRGLQ8N7B6 248 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 PROKR2Q8NFJ6 384 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 TSSK2Q96PF2 358 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 NUAK2Q9H093 628 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 RACGAP1Q9H0H5 632 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 EMC7Q9NPA0 242 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 HINT3Q9NQE9 182 aaKnown RBP13.13□□□□□ -0.31
NUP50-219ENST00000497960 SMPD3Q9NY59 655 aaPredicted RBP13.13□□□□□ -0.31
NUP50-219ENST00000497960 TVP23BQ9NYZ1 205 aa13.13□□□□□ -0.31
NUP50-219ENST00000497960 NDRG4Q9ULP0 352 aaKnown RBP13.13□□□□□ -0.31
NUP50-219ENST00000497960 YLPM1P49750 1951 aaKnown RBP13.12□□□□□ -0.31
NUP50-219ENST00000497960 OR6C68A6NDL8 312 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 PRR23D1E9PI22 279 aaPredicted RBP13.12□□□□□ -0.31
NUP50-219ENST00000497960 M0R129 80 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 PRR23D2P0DMB1 279 aaPredicted RBP13.12□□□□□ -0.31
NUP50-219ENST00000497960 GCH1P30793 250 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 CHN2P52757 468 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 C12orf73Q69YU5 71 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 UGT2A3Q6UWM9 527 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 GLB1L2Q8IW92 636 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 OR2T4Q8NH00 348 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 RDH5Q92781 318 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 RDH12Q96NR8 316 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 MBOAT4Q96T53 435 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 ELOVL3Q9HB03 270 aa13.12□□□□□ -0.31
NUP50-219ENST00000497960 SRA1Q9HD15 236 aaKnown RBP13.12□□□□□ -0.31
NUP50-219ENST00000497960 COA3Q9Y2R0 106 aaPredicted RBP13.12□□□□□ -0.31
NUP50-219ENST00000497960 MALRD1Q5VYJ5 2156 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 IGLV1-36A0A0B4J1U3 117 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 LOC100289279A0A1B0GTE1 492 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 FAM183AA6NL82 134 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 C17orf100A8MU93 164 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 LYNX1G3V0Z9 82 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 DCTN6O00399 190 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 SGCEO43556 437 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 HLA-DQA2P01906 255 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 HPXP02790 462 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 SCG5P05408 212 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 GYPBP06028 91 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 LYNX1P0DP58 116 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 COX5BP10606 129 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 ZNF16P17020 682 aaPredicted RBP13.11□□□□□ -0.31
NUP50-219ENST00000497960 PYCR1P32322 319 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 POLR2IP36954 125 aaKnown RBP13.11□□□□□ -0.31
NUP50-219ENST00000497960 WNT5AP41221 380 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 CDC42P60953 191 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 MRPS11P82912 194 aaKnown RBP13.11□□□□□ -0.31
NUP50-219ENST00000497960 GLO1Q04760 184 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 RIPK1Q13546 671 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 RIN1Q13671 783 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 PCGF3Q3KNV8 242 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 CHRFAM7AQ494W8 412 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 ELFN2Q5R3F8 820 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 CXXC5Q7LFL8 322 aaKnown RBP13.11□□□□□ -0.31
NUP50-219ENST00000497960 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.11□□□□□ -0.31
NUP50-219ENST00000497960 PRIMA1Q86XR5 153 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 ZNF101Q8IZC7 436 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 OR6V1Q8N148 313 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 ABHD4Q8TB40 342 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 FAM81AQ8TBF8 368 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 VCX3BQ9H321 246 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 MED20Q9H944 212 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 CHODLQ9H9P2 273 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 IMPAD1Q9NX62 359 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 B9D1Q9UPM9 204 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 POLR1DQ9Y2S0 133 aa13.11□□□□□ -0.31
NUP50-219ENST00000497960 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.11□□□□□ -0.315e-8■■■■■ 29.2
NUP50-219ENST00000497960 DOK2O60496 412 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 LMX1BO60663 402 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 ABHD16AO95870 558 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 IGHV3-13P01766 116 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 TACSTD2P09758 323 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 SPI1P17947 270 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 ACHEP22303 614 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 GPR6P46095 362 aaPredicted RBP13.1□□□□□ -0.31
NUP50-219ENST00000497960 HTR5AP47898 357 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 SLC25A1P53007 311 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 PPP1CBP62140 327 aa13.1□□□□□ -0.31
NUP50-219ENST00000497960 LSM6P62312 80 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms