RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, human

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-222	ENST00000496567	JAM3	Q9BX67	310 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	YTHDF1	Q9BYJ9	559 aa	Known RBP	18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	FKBP14	Q9NWM8	211 aa		18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	PLEKHB1	Q9UF11	243 aa	Predicted RBP	18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	DIMT1	Q9UNQ2	313 aa	Known RBP	18.87	■□□□□ 0.61
C9orf3-222	ENST00000496567	LOC100509620	A0A075B734	347 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	PTGES3L	E9PB15	166 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	RPSA	P08865	295 aa	Known RBP	18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	CRHBP	P24387	322 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	OPRL1	P41146	370 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	ROM1	Q03395	351 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	ZNF679	Q8IYX0	411 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	SNX33	Q8WV41	574 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	OR8B4	Q96RC9	309 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	DCLRE1C	Q96SD1	692 aa	Known RBP	18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	RHNO1	Q9BSD3	238 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	NIPAL2	Q9H841	368 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	IKZF2	Q9UKS7	526 aa		18.86	■□□□□ 0.61
C9orf3-222	ENST00000496567	DEFB108A	A8MXU0	73 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	ZNF254	O75437	659 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	CD3E	P07766	207 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	CCL2	P13500	99 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	MYL12A	P19105	171 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	CCNO	P22674	350 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	HSD11B1	P28845	292 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	TPTE	P56180	551 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	ZNF85	Q03923	595 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	SPTAN1	Q13813	2472 aa	Known RBP	18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	ARL9	Q6T311	187 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	LRRN1	Q6UXK5	716 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	RFLNB	Q8N5W9	214 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	PIK3IP1	Q96FE7	263 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	RADIL	Q96JH8	1075 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	KCNJ15	Q99712	375 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	CHCHD3	Q9NX63	227 aa	Known RBP	18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	EXOSC1	Q9Y3B2	195 aa	Known RBP	18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	USP9Y	O00507	2555 aa	Predicted RBP	18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	ICE1	Q9Y2F5	2266 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	IGHV2OR16-5	A0A0B4J2B6	119 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	ABCD4	O14678	606 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	APOC1	P02654	83 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	KRT8	P05787	483 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	ZNF35	P13682	527 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	GALK2	Q01415	458 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	GALE	Q14376	348 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	PLEKHG7	Q6ZR37	379 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	SSX6	Q7RTT6	188 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	PIAS4	Q8N2W9	510 aa	Predicted RBP	18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	SLC7A6	Q92536	515 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	TTTY10	Q9BZA0	68 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	ERVK13-1	Q9NX77	482 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567	SLCO1C1	Q9NYB5	712 aa		18.85	■□□□□ 0.61
C9orf3-222	ENST00000496567		A6NNC1	897 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567		F5H5K5	113 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	SIAH2	O43255	324 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	SULT1C4	O75897	302 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	DBH	P09172	617 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	OTX1	P32242	354 aa	Predicted RBP	18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	RIDA	P52758	137 aa	Known RBP	18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	ACTA2	P62736	377 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	ACTG2	P63267	376 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	SLC35A2	P78381	396 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	KRTAP27-1	Q3LI81	207 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	UNQ6126/PRO20091	Q6UXV3	157 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	KCTD20	Q7Z5Y7	419 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	LHFPL3	Q86UP9	236 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	EGFL6	Q8IUX8	553 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	DUSP21	Q9H596	190 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	ELOVL3	Q9HB03	270 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	EIF3K	Q9UBQ5	218 aa	Known RBP	18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	SPEF1	Q9Y4P9	236 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	LRP12	Q9Y561	859 aa		18.84	■□□□□ 0.61
C9orf3-222	ENST00000496567	DOPEY2	Q9Y3R5	2298 aa		18.83	■□□□□ 0.61
C9orf3-222	ENST00000496567		M0R135	149 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	PSMD9	O00233	223 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	CDK1	P06493	297 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	PCSK6	P29122	969 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	CALCR	P30988	508 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	DCTD	P32321	178 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	RSPO1	Q2MKA7	263 aa	Predicted RBP	18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	SLC22A25	Q6T423	547 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	ZNF799	Q96GE5	643 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	NR1H4	Q96RI1	486 aa	Predicted RBP	18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	ALG8	Q9BVK2	526 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	GRIP1	Q9Y3R0	1128 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	RNF115	Q9Y4L5	304 aa		18.83	■□□□□ 0.6
C9orf3-222	ENST00000496567	METTL15	A6NJ78	407 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	PRR32	B1ATL7	298 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	ABHD16A	O95870	558 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	TACSTD2	P09758	323 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	EEF1B2	P24534	225 aa	Known RBP	18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	RGS6	P49758	472 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	CDON	Q4KMG0	1287 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	ZNF684	Q5T5D7	378 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	DRAM2	Q6UX65	266 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	FAM220A	Q7Z4H9	259 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	PAQR4	Q8N4S7	273 aa	Predicted RBP	18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	ZNF283	Q8N7M2	679 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	C4orf45	Q96LM5	186 aa		18.82	■□□□□ 0.6
C9orf3-222	ENST00000496567	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	18.82	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms