RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 RNF122Q9H9V4 155 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 ABCB9Q9NP78 766 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 PNRC2Q9NPJ4 139 aaKnown RBP12.49□□□□□ -0.41
CUX1-209ENST00000487284 G6PC2Q9NQR9 355 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 CENPMQ9NSP4 180 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 SLC22A13Q9Y226 551 aa12.49□□□□□ -0.41
CUX1-209ENST00000487284 KMT2BQ9UMN6 2715 aaPredicted RBP12.49□□□□□ -0.41
CUX1-209ENST00000487284 A0A1W2PPK0 400 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 ANKRD61A6NGH8 418 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 TGM6O95932 706 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 RAF1P04049 648 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 OCM2P0CE71 109 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 ABOP16442 354 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 THBS2P35442 1172 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 GUCA1AP43080 201 aaPredicted RBP12.48□□□□□ -0.41
CUX1-209ENST00000487284 MMP16P51512 607 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 OR10A3P58181 314 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 PPP3R1P63098 170 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 HIST1H3AP68431 136 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 SGCAQ16586 387 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 CEP78Q5JTW2 689 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 HIST2H3PS2Q5TEC6 136 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 ZNF585AQ6P3V2 769 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 MZT2AQ6P582 158 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 GFRALQ6UXV0 394 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 HIST2H3AQ71DI3 136 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 ADGRE4PQ86SQ3 457 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 CD163Q86VB7 1156 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.48□□□□□ -0.41
CUX1-209ENST00000487284 CPT1CQ8TCG5 803 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 RBM24Q9BX46 236 aaKnown RBP12.48□□□□□ -0.41
CUX1-209ENST00000487284 NIPAL2Q9H841 368 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 BCO1Q9HAY6 547 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 B3GAT2Q9NPZ5 323 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 EMC3Q9P0I2 261 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 CLCF1Q9UBD9 225 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 EMC9Q9Y3B6 208 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 V9GYH0 126 aa12.48□□□□□ -0.41
CUX1-209ENST00000487284 SLC22A20A6NK97 555 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 ATXN7O15265 892 aaPredicted RBP12.47□□□□□ -0.41
CUX1-209ENST00000487284 ISG15P05161 165 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 EDN3P14138 238 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 SRMP19623 302 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 MAGEB1P43366 347 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 PSMA6P60900 246 aaKnown RBP12.47□□□□□ -0.41
CUX1-209ENST00000487284 FAM27BQ5VT28 67 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 GPR137CQ8N3F9 429 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 FAM57AQ8TBR7 257 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 TRIB1Q96RU8 372 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 PRRG4Q9BZD6 226 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 DDX28Q9NUL7 540 aaKnown RBP12.47□□□□□ -0.41
CUX1-209ENST00000487284 FAM206AQ9NX38 181 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 OR52A1Q9UKL2 312 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 GTF2A1LQ9UNN4 478 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 ZNF175Q9Y473 711 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 NBASA2RRP1 2371 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 DOCK7Q96N67 2140 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 TMEM269A0A1B0GVZ9 245 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 NOTOA8MTQ0 251 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 ZNF724A8MTY0 619 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 PDCD5O14737 125 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 RER1O15258 196 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 ACHEP22303 614 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 SOX2P48431 317 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 RNPS1Q15287 305 aaKnown RBP12.47□□□□□ -0.41
CUX1-209ENST00000487284 SLC25A35Q3KQZ1 300 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 ACSF3Q4G176 576 aaPredicted RBP12.47□□□□□ -0.41
CUX1-209ENST00000487284 IDNKQ5T6J7 187 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 KLHL24Q6TFL4 600 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 ZNF704Q6ZNC4 412 aaPredicted RBP12.47□□□□□ -0.41
CUX1-209ENST00000487284 LINGO2Q7L985 606 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 SYT9Q86SS6 491 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 RDH10Q8IZV5 341 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 OR51A4Q8NGJ6 313 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 PPP1R14AQ96A00 147 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 ORAI1Q96D31 301 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 ZNF837Q96EG3 531 aaPredicted RBP12.47□□□□□ -0.41
CUX1-209ENST00000487284 LINC00470Q9BZP3 86 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 OCEL1Q9H607 264 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 CRLF2Q9HC73 371 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 TMEM38BQ9NVV0 291 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 COMMD3Q9UBI1 195 aa12.47□□□□□ -0.41
CUX1-209ENST00000487284 NOSIPQ9Y314 301 aaKnown RBP12.47□□□□□ -0.41
CUX1-209ENST00000487284 AHRRA9YTQ3 701 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 UPK1BO75841 260 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 UBCP0CG48 685 aaKnown RBP12.46□□□□□ -0.42
CUX1-209ENST00000487284 EPXP11678 715 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 NPR2P20594 1047 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 CTSSP25774 331 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 APEX1P27695 318 aaKnown RBP12.46□□□□□ -0.42
CUX1-209ENST00000487284 IFITM3Q01628 133 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 STK11Q15831 433 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 ODF4Q2M2E3 257 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 BCL2L15Q5TBC7 163 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 STAC2Q6ZMT1 411 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 GJC3Q8NFK1 279 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 TMEM106AQ96A25 262 aa12.46□□□□□ -0.42
CUX1-209ENST00000487284 BBC3Q96PG8 261 aaPredicted RBP12.46□□□□□ -0.42
CUX1-209ENST00000487284 ALKBH3Q96Q83 286 aaPredicted RBP12.46□□□□□ -0.42
CUX1-209ENST00000487284 GFI1Q99684 422 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms