RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GCDHQ92947 438 aaPredicted RBP9.98□□□□□ -0.81
HDAC6-228ENST00000486227 MIXL1Q9H2W2 232 aa9.98□□□□□ -0.81
HDAC6-228ENST00000486227 ZNF629Q9UEG4 869 aaPredicted RBP9.98□□□□□ -0.81
HDAC6-228ENST00000486227 SNRNP70P08621 437 aaKnown RBP9.98□□□□□ -0.81
HDAC6-228ENST00000486227 ABCD3P28288 659 aa9.98□□□□□ -0.81
HDAC6-228ENST00000486227 CNN3Q15417 329 aaKnown RBP9.98□□□□□ -0.81
HDAC6-228ENST00000486227 EMC4Q5J8M3 183 aa9.98□□□□□ -0.81
HDAC6-228ENST00000486227 MKXQ8IYA7 352 aa9.98□□□□□ -0.81
HDAC6-228ENST00000486227 BARHL1Q9BZE3 327 aa9.98□□□□□ -0.81
HDAC6-228ENST00000486227 FAM86C1Q9NVL1 165 aa9.98□□□□□ -0.81
HDAC6-228ENST00000486227 UBE2J1Q9Y385 318 aaPredicted RBP9.98□□□□□ -0.81
HDAC6-228ENST00000486227 TRGV8A0A0C4DH27 118 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 NUDT19A8MXV4 375 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OIP5O43482 229 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OR2F2O95006 317 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 WNT11O96014 354 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 S100A8P05109 93 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OR2F1Q13607 317 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 HMGN3Q15651 99 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ZXDCQ2QGD7 858 aaPredicted RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 C16orf47Q6ZP98 133 aaPredicted RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 TMPRSS11FQ6ZWK6 438 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 NAXDQ8IW45 347 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ZNF687Q8N1G0 1237 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 C3orf49Q96BT1 292 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 DLL4Q9NR61 685 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 TAS2R5Q9NYW4 299 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 FLVCR2Q9UPI3 526 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 PCDHGA5Q9Y5G8 931 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 PIKFYVEQ9Y2I7 2098 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ZNF814B7Z6K7 855 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 E9PI62 339 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 GLSO94925 669 aaPredicted RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 MTCP1P56278 107 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 CDK5Q00535 292 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 PDZK1IP1Q13113 114 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 GNMTQ14749 295 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OR4D11Q8NGI4 311 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 KTI12Q96EK9 354 aaPredicted RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ZNF764Q96H86 408 aaPredicted RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 DUSP15Q9H1R2 295 aaPredicted RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 CGGBP1Q9UFW8 167 aaPredicted RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 DVL2O14641 736 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 VAMP5O95183 116 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ZFP36L2P47974 494 aaKnown RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 GZMMP51124 257 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OR10A3P58181 314 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 UBE2IP63279 158 aaKnown RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 PAN3Q58A45 887 aaKnown RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 FAM27D1Q5T7N8 215 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 CARFQ8N187 725 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 FAM3DQ96BQ1 224 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 SEC22AQ96IW7 307 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ZNF649Q9BS31 505 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 SELENOIQ9C0D9 397 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ZFP57Q9NU63 452 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 DNAJB12Q9NXW2 375 aaKnown RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 LHX6Q9UPM6 363 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 TRAV17A0A0B4J275 112 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 PRSS37A4D1T9 235 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 FFAR1O14842 300 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ABHD16AO95870 558 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 QDPRP09417 244 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 MAP2K6P52564 334 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 FOXF1Q12946 379 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 SNTB1Q13884 538 aaKnown RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 TMEM81Q6P7N7 255 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 CCDC71Q8IV32 467 aaPredicted RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OR4D9Q8NGE8 314 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OR11L1Q8NGX0 322 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OR14K1Q8NGZ2 314 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 LRFN5Q96NI6 719 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 PAPOLGQ9BWT3 736 aaKnown RBP9.97□□□□□ -0.81
HDAC6-228ENST00000486227 C12orf49Q9H741 205 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 MAN2C1Q9NTJ4 1040 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 ASH2LQ9UBL3 628 aa9.97□□□□□ -0.81
HDAC6-228ENST00000486227 OTOFQ9HC10 1997 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 A0A1B0GTQ1 180 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 BET1O15155 118 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 MED6O75586 246 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 CRYABP02511 175 aaKnown RBP9.96□□□□□ -0.81
HDAC6-228ENST00000486227 TBXA2RP21731 343 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 ATP1B3P54709 279 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 NKX6-1P78426 367 aaPredicted RBP9.96□□□□□ -0.81
HDAC6-228ENST00000486227 DUSP2Q05923 314 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 RNLSQ5VYX0 342 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 SYS1Q8N2H4 156 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 FAM71CQ8NEG0 241 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 SULT4A1Q9BR01 284 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 TMEM59Q9BXS4 323 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 TXNIPQ9H3M7 391 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 SLC22A11Q9NSA0 550 aa9.96□□□□□ -0.81
HDAC6-228ENST00000486227 IGKV1-8A0A0C4DH67 115 aa9.96□□□□□ -0.82
HDAC6-228ENST00000486227 TSTD3H0UI37 97 aa9.96□□□□□ -0.82
HDAC6-228ENST00000486227 HRO43593 1189 aa9.96□□□□□ -0.82
HDAC6-228ENST00000486227 CALCBP10092 127 aa9.96□□□□□ -0.82
HDAC6-228ENST00000486227 GAAP10253 952 aa9.96□□□□□ -0.82
HDAC6-228ENST00000486227 EXD3Q8N9H8 876 aa9.96□□□□□ -0.82
HDAC6-228ENST00000486227 GJC3Q8NFK1 279 aa9.96□□□□□ -0.82
HDAC6-228ENST00000486227 ASB13Q8WXK3 278 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms