RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PDE7BQ9NP56 450 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 MRPS2Q9Y399 296 aaKnown RBP12.24□□□□□ -0.45
USP42-206ENST00000479544 AKR7A3O95154 331 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 CD96P40200 585 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 BLKP51451 505 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 NANOS3P60323 173 aaKnown RBP12.24□□□□□ -0.45
USP42-206ENST00000479544 OR5B2Q96R09 309 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 TIMM29Q9BSF4 260 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 JAM3Q9BX67 310 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 ZNF160Q9HCG1 818 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 CHST11Q9NPF2 352 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 MED29Q9NX70 200 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 ASXL3Q9C0F0 2248 aa12.24□□□□□ -0.45
USP42-206ENST00000479544 HMSDA8MTL9 139 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 PHOX2AO14813 284 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 RPS18P62269 152 aaKnown RBP12.23□□□□□ -0.45
USP42-206ENST00000479544 SP6Q3SY56 376 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 FAM78AQ5JUQ0 283 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 OR9K2Q8NGE7 335 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 RLN3Q8WXF3 142 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 NICN1Q9BSH3 213 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 VN1R3Q9BXE9 311 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 PRRG4Q9BZD6 226 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 PLSCR5A0PG75 271 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 MFSD2BA6NFX1 497 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 TMEM229AB2RXF0 380 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 IFNA10P01566 189 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 IFNA4P05014 189 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 ZNF43P17038 809 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 WWTR1Q9GZV5 400 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 SLC2A4RGQ9NR83 387 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 NXT1Q9UKK6 140 aaKnown RBP12.23□□□□□ -0.45
USP42-206ENST00000479544 SERTM1A2A2V5 107 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 SEC14L5O43304 696 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 OR2T1O43869 369 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 DBHP09172 617 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 PTAFRP25105 342 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 GJA4P35212 333 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 CCINQ13939 588 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 SLC35D3Q5M8T2 416 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 TANGO2Q6ICL3 276 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 LPCAT3Q6P1A2 487 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 ADAMTSL4Q6UY14 1074 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 ZNF695Q8IW36 515 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 LRRC18Q8N456 261 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 TMEM104Q8NE00 496 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 MITD1Q8WV92 249 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 DAZLQ92904 295 aaKnown RBP12.23□□□□□ -0.45
USP42-206ENST00000479544 OR5B12Q96R08 314 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 IL23AQ9NPF7 189 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 PLEK2Q9NYT0 353 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 SLC7A11Q9UPY5 501 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 MDC1Q14676 2089 aaKnown RBP12.23□□□□□ -0.45
USP42-206ENST00000479544 SMCO3A2RU48 225 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 A6NLC8 198 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 SCAF4O95104 1147 aaKnown RBP12.23□□□□□ -0.45
USP42-206ENST00000479544 ZNF205O95201 554 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 UTS2O95399 124 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 TIMP1P01033 207 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 NHLRC3Q5JS37 347 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 TMEM123Q8N131 208 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 OR51A2Q8NGJ7 313 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 OR51E1Q8TCB6 317 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 KLHDC7BQ96G42 594 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 CDX2Q99626 313 aaPredicted RBP12.23□□□□□ -0.45
USP42-206ENST00000479544 SUCNR1Q9BXA5 334 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 UNKLQ9H9P5 680 aaKnown RBP12.23□□□□□ -0.45
USP42-206ENST00000479544 AMDHD2Q9Y303 409 aa12.23□□□□□ -0.45
USP42-206ENST00000479544 OTOFQ9HC10 1997 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 A0A0J9YY10 115 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 CYTIPO60759 359 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 LCATP04180 440 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 NAGAP17050 411 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 NTSR1P30989 418 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 MESP2Q0VG99 397 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 TCTN1Q2MV58 587 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 ELFN2Q5R3F8 820 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 OR5L1Q8NGL2 311 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 C16orf52Q8NHV5 167 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 ATOH1Q92858 354 aaPredicted RBP12.22□□□□□ -0.45
USP42-206ENST00000479544 MOGAT1Q96PD6 335 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 HIST1H2AAQ96QV6 131 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 ZNF576Q9H609 170 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 UFSP2Q9NUQ7 469 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 ALKBH4Q9NXW9 302 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 PPP4R1LQ9P1A2 415 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 RAB22AQ9UL26 194 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 ZFP92A6NM28 416 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 NPIPB8E9PQR5 432 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 STMND1H3BQB6 276 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 SLC17A2O00624 439 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 BET1O15155 118 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 DNAJB6O75190 326 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 S100A8P05109 93 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 CT62P0C5K7 136 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 FCGR2AP12318 317 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 RPL12P30050 165 aaKnown RBP12.22□□□□□ -0.45
USP42-206ENST00000479544 PPIAP62937 165 aaKnown RBP12.22□□□□□ -0.45
USP42-206ENST00000479544 FUT5Q11128 374 aa12.22□□□□□ -0.45
USP42-206ENST00000479544 C2orf68Q2NKX9 166 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms