RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 AGBL2Q5U5Z8 902 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 CD276Q5ZPR3 534 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 OR2T2Q6IF00 324 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 EPGNQ6UW88 154 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 GDPGP1Q6ZNW5 385 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 DCDC5Q6ZRR9 648 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 REC114Q7Z4M0 266 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 TMEM255BQ8WV15 326 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 ZNF582Q96NG8 517 aaPredicted RBP14.25□□□□□ -0.13
VIM-204ENST00000478746 TBX15Q96SF7 602 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 CPPED1Q9BRF8 314 aaPredicted RBP14.25□□□□□ -0.13
VIM-204ENST00000478746 DPAGT1Q9H3H5 408 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 C16orf95Q9H693 158 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 POLE4Q9NR33 117 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 NKIRAS1Q9NYS0 192 aa14.25□□□□□ -0.13
VIM-204ENST00000478746 IGHV1-69DA0A0B4J2H0 117 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 F5H5P2 479 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 POLR3GO15318 223 aaPredicted RBP14.24□□□□□ -0.13
VIM-204ENST00000478746 SGCEO43556 437 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 IGHV1-69P01742 117 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 IRF2P14316 349 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 MMP9P14780 707 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 PMELP40967 661 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 NPY4RP50391 375 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 SLC18A1P54219 525 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 SCRN3Q0VDG4 424 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 KPRPQ5T749 579 aaPredicted RBP14.24□□□□□ -0.13
VIM-204ENST00000478746 PATL1Q86TB9 770 aaKnown RBP14.24□□□□□ -0.13
VIM-204ENST00000478746 OR5L1Q8NGL2 311 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 TMEM239Q8WW34 195 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 WDFY2Q96P53 400 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 TECTBQ96PL2 329 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 EMC7Q9NPA0 242 aa14.24□□□□□ -0.13
VIM-204ENST00000478746 TET2Q6N021 2002 aaPredicted RBP14.24□□□□□ -0.13
VIM-204ENST00000478746 KMT2CQ8NEZ4 4911 aaKnown RBP14.23□□□□□ -0.13
VIM-204ENST00000478746 ATP8B1O43520 1251 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 TAS2R41P59536 307 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 CTXN1P60606 82 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 MAGOHP61326 146 aaKnown RBP14.23□□□□□ -0.13
VIM-204ENST00000478746 METTL11BQ5VVY1 283 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 DLEU7Q6UYE1 221 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 FBXW12Q6X9E4 464 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 LDLRAD3Q86YD5 345 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 PCYOX1LQ8NBM8 494 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 SCCPDHQ8NBX0 429 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 SLC7A6Q92536 515 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 LHX4Q969G2 390 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 TLCD1Q96CP7 247 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 ATP6V1G3Q96LB4 118 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 PTTG3PQ9NZH4 202 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 ERVK-18Q9QC07 812 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 MED31Q9Y3C7 131 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 PLXNB1O43157 2135 aa14.23□□□□□ -0.13
VIM-204ENST00000478746 A0A0U1RQK1 487 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 ZNF816-ZNF321PA0A0X1KG74 233 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 A6NIZ1 184 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 MLNRO43193 412 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 OPN1MWP04001 364 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 OPN1MW2P0DN77 364 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 OPN1MW3P0DN78 364 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 PSMB10P40306 273 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 RAP1BP61224 184 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 RAP1AP62834 184 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 SAMD5Q5TGI4 173 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 PNLDC1Q8NA58 520 aaKnown RBP14.22□□□□□ -0.13
VIM-204ENST00000478746 C19orf18Q8NEA5 215 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 LRTOMTQ8WZ04 291 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 TAMM41Q96BW9 452 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.22□□□□□ -0.13
VIM-204ENST00000478746 TMEM100Q9NV29 134 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 RIMS3Q9UJD0 308 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 HIF3AQ9Y2N7 669 aa14.22□□□□□ -0.13
VIM-204ENST00000478746 HMGB1P1B2RPK0 211 aaPredicted RBP14.21□□□□□ -0.13
VIM-204ENST00000478746 RGS6P49758 472 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 EGR3Q06889 387 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 AGKQ53H12 422 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 HSP90B2PQ58FF3 399 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 DHRS7BQ6IAN0 325 aaPredicted RBP14.21□□□□□ -0.13
VIM-204ENST00000478746 IGFN1Q86VF2 1251 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 OR11L1Q8NGX0 322 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 MRAPQ8TCY5 172 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 RASSF5Q8WWW0 418 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 RASD2Q96D21 266 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 MMADHCQ9H3L0 296 aaPredicted RBP14.21□□□□□ -0.13
VIM-204ENST00000478746 TMCC3Q9ULS5 477 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 SH3GLB1Q9Y371 365 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 FAM96BQ9Y3D0 163 aa14.21□□□□□ -0.13
VIM-204ENST00000478746 J3QW42 95 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 FBP2O00757 339 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 TSPAN9O75954 239 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 OR5F1O95221 314 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 FPR3P25089 353 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 GATA4P43694 442 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 IDH3AP50213 366 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 LOXL3P58215 753 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 PIN1Q13526 163 aaPredicted RBP14.2□□□□□ -0.14
VIM-204ENST00000478746 INTS11Q5TA45 600 aaKnown RBP14.2□□□□□ -0.14
VIM-204ENST00000478746 BHLHE23Q8NDY6 225 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 OR1F12Q8NHA8 337 aa14.2□□□□□ -0.14
VIM-204ENST00000478746 SIRPDQ9H106 197 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms