RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 AWAT1Q58HT5 328 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 OTPQ5XKR4 325 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DPY19L2P2Q6ZN68 376 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 FKBP9P1Q75LS8 142 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DOK3Q7L591 496 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SPICQ8N5J4 248 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 OR2Z1Q8NG97 314 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZMYND19Q96E35 227 aaPredicted RBP10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 FAM46AQ96IP4 442 aaKnown RBP10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 C1orf147Q96MC9 270 aaPredicted RBP10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 OR2V2Q96R30 315 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NUAK2Q9H093 628 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 EFCAB1Q9HAE3 211 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NTN4Q9HB63 628 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TMEM165Q9HC07 324 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 DCAF13Q9NV06 445 aaKnown RBP10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PLEK2Q9NYT0 353 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ASH2LQ9UBL3 628 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PPP1R3CQ9UQK1 317 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 LHFPL6Q9Y693 200 aa10.29□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 IGLV1-36A0A0B4J1U3 117 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TRBV4-1A0A0J9YWV2 114 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 IFNL4K9M1U5 179 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SURF4O15260 269 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SEMG1P04279 462 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 H1F0P07305 194 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 PPIAL4GP0DN37 164 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 HKR1P10072 659 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NCK1P16333 377 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 TNFSF4P23510 183 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 MDH2P40926 338 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 HLXQ14774 488 aaPredicted RBP10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZNF181Q2M3W8 571 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ADCK1Q86TW2 530 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 BPIFB2Q8N4F0 458 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 KLHL36Q8N4N3 616 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 C3orf56Q8N813 242 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 OR8G5Q8NG78 346 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SGMS2Q8NHU3 365 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZNF48Q96MX3 618 aaPredicted RBP10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ELAC2Q9BQ52 826 aaKnown RBP10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 SLC30A2Q9BRI3 323 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 MYLK2Q9H1R3 596 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 ZNF69Q9UC07 566 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 NUP50Q9UKX7 468 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 IER3IP1Q9Y5U9 82 aa10.28□□□□□ -0.76
MSH5-SAPCD1-205ENST00000476085 CEACAM18A8MTB9 384 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 IQCF6A8MYZ5 107 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 NDUFAB1O14561 156 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ARPC3O15145 178 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GSTA4O15217 222 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MLNRO43193 412 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SPRY1O43609 319 aaPredicted RBP10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SNX3O60493 162 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GPANK1O95872 356 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CD80P33681 288 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PMELP40967 661 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RGS6P49758 472 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MMP16P51512 607 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GNGT1P63211 74 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 COX10Q12887 443 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SLC27A4Q6P1M0 643 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF771Q7L3S4 317 aaPredicted RBP10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RRM2BQ7LG56 351 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CYP4Z1Q86W10 505 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 BCL6BQ8N143 479 aaPredicted RBP10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FAM86B1Q8N7N1 296 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SIGLECL1Q8N7X8 197 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GJC3Q8NFK1 279 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR13G1Q8NGZ3 307 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 C22orf15Q8WYQ4 148 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 APOBEC3DQ96AK3 386 aaPredicted RBP10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CMTM5Q96DZ9 223 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RSRC1Q96IZ7 334 aaKnown RBP10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MEGF10Q96KG7 1140 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 TSSK2Q96PF2 358 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 COQ7Q99807 217 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZNF747Q9BV97 191 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 C1QTNF5Q9BXJ0 243 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 FAM107BQ9H098 131 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 IL20RAQ9UHF4 553 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RPS6KA6Q9UK32 745 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 B9D1Q9UPM9 204 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 AUP1Q9Y679 476 aa10.27□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 UNC119BA6NIH7 251 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 H0YL77 283 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 CLDN34H7C241 214 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 SOCS2O14508 198 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PPP1R3DO95685 299 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PRTN3P24158 256 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GATA4P43694 442 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 PSME3P61289 254 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MEP1BQ16820 701 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 RFX4Q33E94 735 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 GLYATQ6IB77 296 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR2T2Q6IF00 324 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 C9orf139Q6ZV77 190 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 ZBTB46Q86UZ6 589 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 OR6V1Q8N148 313 aa10.26□□□□□ -0.77
MSH5-SAPCD1-205ENST00000476085 MUC20Q8N307 709 aaPredicted RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms