RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 IMPG1Q17R60 797 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 C16orf54Q6UWD8 224 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 ZNF836Q6ZNA1 936 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 ZCCHC23Q6ZST2 131 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 C3orf62Q6ZUJ4 267 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 DPPA2Q7Z7J5 298 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 SERPINA11Q86U17 422 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 ZNF329Q86UD4 541 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 Q8N1Y9 231 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 C11orf42Q8N5U0 333 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 DTX3Q8N9I9 347 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 BOLLQ8N9W6 283 aaKnown RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 BHLHE23Q8NDY6 225 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 KLHL30-AS1Q8NEE0 82 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 OR8G5Q8NG78 346 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 OR52H1Q8NGJ2 320 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 OR6X1Q8NH79 312 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 PYROXD1Q8WU10 500 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 SLC7A6Q92536 515 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 CDKL2Q92772 493 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 MCHR2Q969V1 340 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 RNF166Q96A37 237 aaPredicted RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 NMD3Q96D46 503 aaKnown RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 COQ8BQ96D53 544 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 MTERF3Q96E29 417 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 SLC35G5Q96KT7 338 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 MAGEB18Q96M61 343 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 BAG1Q99933 345 aaPredicted RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 ECSITQ9BQ95 431 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 ST6GALNAC5Q9BVH7 336 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 OR2H1Q9GZK4 316 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 TUBB1Q9H4B7 451 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 PPP1R3EQ9H7J1 279 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 MEAF6Q9HAF1 191 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 SLCO1B3Q9NPD5 702 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 TBCCD1Q9NVR7 557 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 C1orf109Q9NX04 203 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 KAAG1Q9UBP8 84 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 BLOC1S6Q9UL45 172 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 NDRG4Q9ULP0 352 aaKnown RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 TMCO1Q9UM00 188 aa3.77□□□□□ -1.81
USP4-209ENST00000475873 V9GYY5 206 aaPredicted RBP3.77□□□□□ -1.81
USP4-209ENST00000475873 FAT1Q14517 4588 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 IGLV1-36A0A0B4J1U3 117 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 OOEPA6NGQ2 149 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 C11orf98E9PRG8 122 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 LSM1O15116 133 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 BRI3O95415 125 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 SLC2A10O95528 541 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 ABHD16AO95870 558 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 MBD3O95983 291 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 SCG5P05408 212 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 G6PDP11413 515 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 RAC2P15153 192 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 NQO1P15559 274 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 GSTM3P21266 225 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 HTR2AP28223 471 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 ATP6V1E1P36543 226 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 ZNF133P52736 654 aaPredicted RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 PKNOX1P55347 436 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 RPL38P63173 70 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 MRPS34P82930 218 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 GUCY1A3Q02108 690 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.76□□□□□ -1.81
USP4-209ENST00000475873 SELPLGQ14242 412 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 PTGR1Q14914 329 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 RBMY1FQ15415 496 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 ZNF260Q3ZCT1 412 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 GPAT3Q53EU6 434 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 WDR38Q5JTN6 314 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 HHATQ5VTY9 493 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 NCR3LG1Q68D85 454 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 ZNF826PQ6ZT77 177 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 SLC35D2Q76EJ3 337 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 PXKQ7Z7A4 578 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 RIMKLAQ8IXN7 391 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 OSR2Q8N2R0 312 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 GCSAMQ8N6F7 178 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 MAPKAPK5-AS1Q8N8E1 139 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 OR13G1Q8NGZ3 307 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 AENQ8WTP8 325 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 SEPHS2Q99611 448 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 CCL13Q99616 98 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 MRPL57Q9BQC6 102 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 SPATA25Q9BR10 227 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 MRPL13Q9BYD1 178 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 TRIM31Q9BZY9 425 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 MRPL46Q9H2W6 279 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 METTL8Q9H825 291 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 ELOVL3Q9HB03 270 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 MID1IP1Q9NPA3 183 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 MRPL39Q9NYK5 338 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 RNF7Q9UBF6 113 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 PRPF19Q9UMS4 504 aaKnown RBP3.76□□□□□ -1.81
USP4-209ENST00000475873 LYVE1Q9Y5Y7 322 aa3.76□□□□□ -1.81
USP4-209ENST00000475873 TRAV36DV7A0A075B6V5 113 aa3.75□□□□□ -1.81
USP4-209ENST00000475873 NUDT19A8MXV4 375 aa3.75□□□□□ -1.81
USP4-209ENST00000475873 IQCF6A8MYZ5 107 aa3.75□□□□□ -1.81
USP4-209ENST00000475873 M0R1W7 72 aa3.75□□□□□ -1.81
USP4-209ENST00000475873 ACOT8O14734 319 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms