RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 TSTQ16762 297 aaKnown RBP12.16□□□□□ -0.46
VAMP4-203ENST00000474047 ZMAT1Q5H9K5 638 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 HIST2H3PS2Q5TEC6 136 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 CFAP77Q6ZQR2 320 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 HIST2H3AQ71DI3 136 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 DNAJC9Q8WXX5 260 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 RDH5Q92781 318 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 ATF6BQ99941 703 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 NTN4Q9HB63 628 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 PAPOLBQ9NRJ5 636 aaKnown RBP12.16□□□□□ -0.46
VAMP4-203ENST00000474047 MRPL22Q9NWU5 206 aaKnown RBP12.16□□□□□ -0.46
VAMP4-203ENST00000474047 CYB5R1Q9UHQ9 305 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 STARD10Q9Y365 291 aa12.16□□□□□ -0.46
VAMP4-203ENST00000474047 FAM183AA6NL82 134 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 PRR23D1E9PI22 279 aaPredicted RBP12.15□□□□□ -0.46
VAMP4-203ENST00000474047 F5H5K5 113 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 LYNX1G3V0Z9 82 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 G3V2T6 193 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 SPRY3O43610 288 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 HPXP02790 462 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 SPARCP09486 303 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 PRR23D2P0DMB1 279 aaPredicted RBP12.15□□□□□ -0.46
VAMP4-203ENST00000474047 LYNX1P0DP58 116 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 ZNF23P17027 643 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 GGT2P36268 569 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 MAGEB1P43366 347 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 CCNIQ14094 377 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 TAF13Q15543 124 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 HIPK1Q86Z02 1210 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 ZNF511Q8NB15 262 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 UTP4Q969X6 686 aaKnown RBP12.15□□□□□ -0.46
VAMP4-203ENST00000474047 APOBEC3DQ96AK3 386 aaPredicted RBP12.15□□□□□ -0.46
VAMP4-203ENST00000474047 CMBLQ96DG6 245 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 OR51V1Q9H2C8 321 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 MED20Q9H944 212 aa12.15□□□□□ -0.46
VAMP4-203ENST00000474047 ZNF593O00488 134 aaPredicted RBP12.14□□□□□ -0.47
VAMP4-203ENST00000474047 CLUP10909 449 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 ENTPD1P49961 510 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 TPTEP56180 551 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 ACSM5Q6NUN0 579 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 ASRGL1Q7L266 308 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 AMIGO2Q86SJ2 522 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 ZDHHC13Q8IUH4 622 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 ZNRF4Q8WWF5 429 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 PTP4A1Q93096 173 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 SPTSSAQ969W0 71 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 NMNAT2Q9BZQ4 307 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 BPESC1Q9GZL8 116 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 EGLN1Q9GZT9 426 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 WDR76Q9H967 626 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 YAE1D1Q9NRH1 226 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 KRT84Q9NSB2 600 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 PTTG3PQ9NZH4 202 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 CGGBP1Q9UFW8 167 aaPredicted RBP12.14□□□□□ -0.47
VAMP4-203ENST00000474047 CR1P17927 2039 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 VWC2LB2RUY7 222 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 J3QW42 95 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 CDC14BO60729 498 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 COL8A2P25067 703 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 GIFP27352 417 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 RPS27P42677 84 aaKnown RBP12.14□□□□□ -0.47
VAMP4-203ENST00000474047 SLC6A9P48067 706 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 PSG7Q13046 419 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 TMEM249Q2WGJ8 235 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 LYPD4Q6UWN0 246 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 DCXRQ7Z4W1 244 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 LRTOMTQ8WZ04 291 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 GTF3AQ92664 365 aaKnown RBP12.14□□□□□ -0.47
VAMP4-203ENST00000474047 CHODLQ9H9P2 273 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 CENPMQ9NSP4 180 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 NKIRAS2Q9NYR9 191 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 PURGQ9UJV8 347 aaKnown RBP12.14□□□□□ -0.47
VAMP4-203ENST00000474047 ZDHHC8Q9ULC8 765 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 COMMD3-BMI1R4GMX3 469 aa12.14□□□□□ -0.47
VAMP4-203ENST00000474047 LCATP04180 440 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 ACHEP22303 614 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 GSTT1P30711 240 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 GPR6P46095 362 aaPredicted RBP12.13□□□□□ -0.47
VAMP4-203ENST00000474047 DAPP51397 102 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 CRISP1P54107 249 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 RPS7P62081 194 aaKnown RBP12.13□□□□□ -0.47
VAMP4-203ENST00000474047 CDK5Q00535 292 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 MALLQ13021 153 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 SNAPC1Q16533 368 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 KLHL12Q53G59 568 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 TMEM236Q5W0B7 351 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 CYB5R2Q6BCY4 276 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 PLBD1Q6P4A8 553 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 ERI1Q8IV48 349 aaKnown RBP12.13□□□□□ -0.47
VAMP4-203ENST00000474047 C10orf67Q8IYJ2 551 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 DUS3LQ96G46 650 aaKnown RBP12.13□□□□□ -0.47
VAMP4-203ENST00000474047 MAP6Q96JE9 813 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 DIRC2Q96SL1 478 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 INTS14Q96SY0 518 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 COPS4Q9BT78 406 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 HCAR1Q9BXC0 346 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 PRRG3Q9BZD7 231 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 SEMA6AQ9H2E6 1030 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 POFUT1Q9H488 388 aa12.13□□□□□ -0.47
VAMP4-203ENST00000474047 SAP30LQ9HAJ7 183 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms