RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SEC61A1P61619 476 aaKnown RBP15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 KRT72Q14CN4 511 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 FBXW12Q6X9E4 464 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 PTP4A1Q93096 173 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 PYURFQ96I23 114 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 ERMAPQ96PL5 475 aaPredicted RBP15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 OR2V2Q96R30 315 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 SLC6A7Q99884 636 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 FAM107BQ9H098 131 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 OR52D1Q9H346 318 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 C7orf69Q9H7B7 122 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 PTTG3PQ9NZH4 202 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 PPP1R3CQ9UQK1 317 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 POLR1DQ9Y2S0 133 aa15.83■□□□□ 0.12
CCDC88B-206ENST00000473405 PPIAL4EA0A075B759 164 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 PPIAL4CA0A0B4J2A2 164 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 PPIAL4DF5H284 164 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 GADD45GO95257 159 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 SBK2P0C263 348 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 PPIAL4FP0DN26 164 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 FPR3P25089 353 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 CRABP1P29762 137 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 MMP16P51512 607 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 BTG1P62324 171 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 SPIBQ01892 262 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 COX10Q12887 443 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 RSPO1Q2MKA7 263 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 RFX4Q33E94 735 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 TMEM155Q4W5P6 130 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 LEG1Q6P5S2 330 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 DNM1P34Q6PK57 102 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 CORO6Q6QEF8 472 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 ZSCAN2Q7Z7L9 614 aaPredicted RBP15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 OR5AS1Q8N127 324 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 OR6V1Q8N148 313 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 DEFB108BQ8NET1 73 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 SLC26A10Q8NG04 563 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 OR10AD1Q8NGE0 317 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 NANPQ8TBE9 248 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 ST7LQ8TDW4 575 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 NMNAT3Q96T66 252 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 COQ7Q99807 217 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 HDHD2Q9H0R4 259 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 GCM1Q9NP62 436 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 MMP26Q9NRE1 261 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 CD300AQ9UGN4 299 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 MAGEL2Q9UJ55 1249 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 B9D1Q9UPM9 204 aa15.82■□□□□ 0.12
CCDC88B-206ENST00000473405 F5H0A9 414 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 ARPC2O15144 300 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 ARPC3O15145 178 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 GMNNO75496 209 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 FOXH1O75593 365 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 HIST1H1CP16403 213 aaKnown RBP15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 MSX2P35548 267 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 KRTAP27-1Q3LI81 207 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 OR2T2Q6IF00 324 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 PGM2L1Q6PCE3 622 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 CFAP77Q6ZQR2 320 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 LRRC28Q86X40 367 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 SPICQ8N5J4 248 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 GJC3Q8NFK1 279 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 FAM216AQ8WUB2 273 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 APOBEC3DQ96AK3 386 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 ESM1Q9NQ30 184 aa15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 POLR3KQ9Y2Y1 108 aaPredicted RBP15.81■□□□□ 0.12
CCDC88B-206ENST00000473405 TRRAPQ9Y4A5 3859 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 TMEM178BH3BS89 294 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 SURF4O15260 269 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 MLNRO43193 412 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 CFPP27918 469 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 SLC6A6P31641 620 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 SLC6A9P48067 706 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 GSSP48637 474 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 CENPAP49450 140 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 SMIM11AP58511 58 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 C12orf54Q6X4T0 127 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 COLCA1Q6ZS62 124 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 ZBTB46Q86UZ6 589 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 JAZF1Q86VZ6 243 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 PGAM4Q8N0Y7 254 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 KLHL36Q8N4N3 616 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 OR8G5Q8NG78 346 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 OR4K13Q8NH42 304 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 DVL3Q92997 716 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 SUCNR1Q9BXA5 334 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 FN3KQ9H479 309 aa15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 PATZ1Q9HBE1 687 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 SRA1Q9HD15 236 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 RPRD1BQ9NQG5 326 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-206ENST00000473405 DOCK11Q5JSL3 2073 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 A0A1B0GWJ7 208 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 OR6C68A6NDL8 312 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 A8MXK9 166 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 H0YL77 283 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 TRAPPC2LH3BP13 241 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 OR10H3O60404 316 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 FABP3P05413 133 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 RRM2P31350 389 aa15.79■□□□□ 0.12
CCDC88B-206ENST00000473405 COMPP49747 757 aaPredicted RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms