RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 C1orf174Q8IYL3 243 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 DEFB107AQ8IZN7 70 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 NPEPL1Q8NDH3 523 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 OR10AD1Q8NGE0 317 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 ZNF420Q8TAQ5 688 aaPredicted RBP14.06□□□□□ -0.16
USP40-212ENST00000473191 RAB39BQ96DA2 213 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 TIMD4Q96H15 378 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 NSMCE2Q96MF7 247 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 WACQ9BTA9 647 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 EGLN3Q9H6Z9 239 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 RPRD1BQ9NQG5 326 aaKnown RBP14.06□□□□□ -0.16
USP40-212ENST00000473191 MMP26Q9NRE1 261 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 TMEM106BQ9NUM4 274 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 OPN4Q9UHM6 478 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 TAGLN3Q9UI15 199 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 MAGEL2Q9UJ55 1249 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 NPTNQ9Y639 398 aa14.06□□□□□ -0.16
USP40-212ENST00000473191 GMNNO75496 209 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 ZNF205O95201 554 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 FABP3P05413 133 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 ATP6V1B2P21281 511 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 FPR3P25089 353 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 RPS27P42677 84 aaKnown RBP14.05□□□□□ -0.16
USP40-212ENST00000473191 GSSP48637 474 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 ARL9Q6T311 187 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 LYPD4Q6UWN0 246 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 CYP2R1Q6VVX0 501 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 SLC26A10Q8NG04 563 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 OR9Q2Q8NGE9 314 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 PTP4A1Q93096 173 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 OR2V2Q96R30 315 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 BTBD10Q9BSF8 475 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 IFT27Q9BW83 186 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 NDEL1Q9GZM8 345 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 NSRP1Q9H0G5 558 aaKnown RBP14.05□□□□□ -0.16
USP40-212ENST00000473191 IL1RAPQ9NPH3 570 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 PNRC2Q9NPJ4 139 aaKnown RBP14.05□□□□□ -0.16
USP40-212ENST00000473191 MRPL22Q9NWU5 206 aaKnown RBP14.05□□□□□ -0.16
USP40-212ENST00000473191 CGGBP1Q9UFW8 167 aaPredicted RBP14.05□□□□□ -0.16
USP40-212ENST00000473191 POLR1DQ9Y2S0 133 aa14.05□□□□□ -0.16
USP40-212ENST00000473191 C5orf63A6NC05 138 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 MLNRO43193 412 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 ANPEPP15144 967 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 EPHA1P21709 976 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 SLC6A6P31641 620 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 HOXA4Q00056 320 aaPredicted RBP14.04□□□□□ -0.16
USP40-212ENST00000473191 ZMYND11Q15326 602 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 KRTAP27-1Q3LI81 207 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 SAMD4BQ5PRF9 694 aaKnown RBP14.04□□□□□ -0.16
USP40-212ENST00000473191 CLEC12AQ5QGZ9 265 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 DCAF12L2Q5VW00 463 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 SLC18B1Q6NT16 456 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 SHQ1Q6PI26 577 aaKnown RBP14.04□□□□□ -0.16
USP40-212ENST00000473191 ZNF620Q6ZNG0 422 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 JAZF1Q86VZ6 243 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 ZDHHC21Q8IVQ6 265 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 ZNF283Q8N7M2 679 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 BHLHE23Q8NDY6 225 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 OR52E2Q8NGJ4 325 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 OR8D4Q8NGM9 314 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 C22orf15Q8WYQ4 148 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 DIRC2Q96SL1 478 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 PLA2G12AQ9BZM1 189 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 KRCC1Q9NPI7 259 aaPredicted RBP14.04□□□□□ -0.16
USP40-212ENST00000473191 ARL2BPQ9Y2Y0 163 aa14.04□□□□□ -0.16
USP40-212ENST00000473191 A0A0G2JMP0 313 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 A0A0X1KG70 313 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 TRAPPC2LH3BP13 241 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 ARPC3O15145 178 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 CRABP1P29762 137 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 PYCR1P32322 319 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 GGT2P36268 569 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 COX10Q12887 443 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 ZMAT1Q5H9K5 638 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 FBXW12Q6X9E4 464 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 ZBTB46Q86UZ6 589 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 ATG16L2Q8NAA4 619 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 CYB561A3Q8NBI2 242 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 GJC3Q8NFK1 279 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 OR4M2Q8NGB6 313 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 OR10S1Q8NGN2 331 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 MCUR1Q96AQ8 359 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 DDOQ99489 341 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 COQ7Q99807 217 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 GCM1Q9NP62 436 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 VNN3Q9NY84 501 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 IL19Q9UHD0 177 aa14.03□□□□□ -0.16
USP40-212ENST00000473191 TCRBV5S2A0A599 114 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 F5H5K5 113 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 CYB5R3P00387 301 aaPredicted RBP14.02□□□□□ -0.17
USP40-212ENST00000473191 RENP00797 406 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 HLA-DPB1P04440 258 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 RAC2P15153 192 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 PMELP40967 661 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 MMP16P51512 607 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP40-212ENST00000473191 SLC3A1Q07837 685 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 TSPAN31Q12999 210 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 FAM201AQ5SY85 155 aa14.02□□□□□ -0.17
USP40-212ENST00000473191 ZNF362Q5T0B9 420 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms