RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 LRRC28Q86X40 367 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-210ENST00000472880 OR5AS1Q8N127 324 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 MUC20Q8N307 709 aaPredicted RBP16.64■□□□□ 0.25
COL9A3-210ENST00000472880 ZDHHC22Q8N966 263 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 ATG16L2Q8NAA4 619 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 OR5L1Q8NGL2 311 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 SIGLEC11Q96RL6 698 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 MRI1Q9BV20 369 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 NUAK2Q9H093 628 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 PTTG3PQ9NZH4 202 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 NDUFAF4Q9P032 175 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 ABCD2Q9UBJ2 740 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 AUP1Q9Y679 476 aa16.64■□□□□ 0.25
COL9A3-210ENST00000472880 UNC119BA6NIH7 251 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 IMPA2O14732 288 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 DBHP09172 617 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 MDH2P40926 338 aaKnown RBP16.63■□□□□ 0.25
COL9A3-210ENST00000472880 CENPAP49450 140 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 MMP16P51512 607 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 SEC61A1P61619 476 aaKnown RBP16.63■□□□□ 0.25
COL9A3-210ENST00000472880 UBA52P62987 128 aaKnown RBP16.63■□□□□ 0.25
COL9A3-210ENST00000472880 ZNF154Q13106 437 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 KRT72Q14CN4 511 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 ESCO2Q56NI9 601 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 SLC27A4Q6P1M0 643 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 DPY19L2P2Q6ZN68 376 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 PTCHD4Q6ZW05 846 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 PIGWQ7Z7B1 504 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-210ENST00000472880 DVL3Q92997 716 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-210ENST00000472880 HDHD2Q9H0R4 259 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 MMP26Q9NRE1 261 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 OR5V1Q9UGF6 321 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 SAMD4AQ9UPU9 718 aaKnown RBP16.63■□□□□ 0.25
COL9A3-210ENST00000472880 POLR3KQ9Y2Y1 108 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-210ENST00000472880 PPIAL4AQ9Y536 164 aa16.63■□□□□ 0.25
COL9A3-210ENST00000472880 TENM1Q9UKZ4 2725 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 ARHGAP32A7KAX9 2087 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 TRBV4-1A0A0J9YWV2 114 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 A8MXK9 166 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 IFNL4K9M1U5 179 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 GMNNO75496 209 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 ZNF12P17014 697 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 CRABP1P29762 137 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 SLC6A9P48067 706 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 FXYD6P3P58550 94 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 PSME3P61289 254 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 HLXQ14774 488 aaPredicted RBP16.62■□□□□ 0.25
COL9A3-210ENST00000472880 KCNMB1Q16558 191 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 OR2T2Q6IF00 324 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 SMARCD3Q6STE5 483 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 FBXW12Q6X9E4 464 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 GJC3Q8NFK1 279 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 OR10AD1Q8NGE0 317 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 FANK1Q8TC84 345 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 APOBEC3DQ96AK3 386 aaPredicted RBP16.62■□□□□ 0.25
COL9A3-210ENST00000472880 COQ7Q99807 217 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 GCM1Q9NP62 436 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 NUP50Q9UKX7 468 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 ARL2BPQ9Y2Y0 163 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 INSIG2Q9Y5U4 225 aa16.62■□□□□ 0.25
COL9A3-210ENST00000472880 F5H0A9 414 aaPredicted RBP16.61■□□□□ 0.25
COL9A3-210ENST00000472880 TRAPPC2LH3BP13 241 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 TMEM178BH3BS89 294 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 SPRY1O43609 319 aaPredicted RBP16.61■□□□□ 0.25
COL9A3-210ENST00000472880 PPP1R3DO95685 299 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 TXNDC12O95881 172 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 CDKN2AP42771 156 aaKnown RBP16.61■□□□□ 0.25
COL9A3-210ENST00000472880 SRP9P49458 86 aaKnown RBP16.61■□□□□ 0.25
COL9A3-210ENST00000472880 SEC23BQ15437 767 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 AWAT1Q58HT5 328 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 GLYATQ6IB77 296 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 SIGLECL1Q8N7X8 197 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 OR8G5Q8NG78 346 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 OR13G1Q8NGZ3 307 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 OR52J3Q8NH60 311 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 SGMS2Q8NHU3 365 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 ZNF582Q96NG8 517 aaPredicted RBP16.61■□□□□ 0.25
COL9A3-210ENST00000472880 SPAG4Q9NPE6 437 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 LRCH1Q9Y2L9 728 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 LHFPL6Q9Y693 200 aa16.61■□□□□ 0.25
COL9A3-210ENST00000472880 CEACAM18A8MTB9 384 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 DIRAS1O95057 198 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 GPANK1O95872 356 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 MEP1BQ16820 701 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 JAZF1Q86VZ6 243 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 FAM86B1Q8N7N1 296 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 ZNF420Q8TAQ5 688 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-210ENST00000472880 MEGF10Q96KG7 1140 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 C7orf34Q96L11 122 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 DHRS1Q96LJ7 313 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 TSSK2Q96PF2 358 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 ERMAPQ96PL5 475 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-210ENST00000472880 GPA33Q99795 319 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 DCAF13Q9NV06 445 aaKnown RBP16.6■□□□□ 0.25
COL9A3-210ENST00000472880 ADA2Q9NZK5 511 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 ZNF69Q9UC07 566 aa16.6■□□□□ 0.25
COL9A3-210ENST00000472880 RENP00797 406 aa16.59■□□□□ 0.25
COL9A3-210ENST00000472880 RPS2P15880 293 aaKnown RBP16.59■□□□□ 0.25
COL9A3-210ENST00000472880 SLC6A6P31641 620 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms