RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 C2orf76Q3KRA6 126 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 ATPAF1Q5TC12 328 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-205ENST00000469550 FCRL6Q6DN72 434 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 FBXO42Q6P3S6 717 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 LEG1Q6P5S2 330 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 KIRREL2Q6UWL6 708 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 FAM122BQ7Z309 247 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 ZAR1Q86SH2 424 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 BIVMQ86UB2 503 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 LSRQ86X29 649 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-205ENST00000469550 OR8K3Q8NH51 312 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 FAM3DQ96BQ1 224 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 CMKLR1Q99788 373 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 PDCD10Q9BUL8 212 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 SEC11CQ9BY50 192 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 FANCFQ9NPI8 374 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 STARD5Q9NSY2 213 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 ZFP57Q9NU63 452 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 SLC2A8Q9NY64 477 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 LRIT1Q9P2V4 623 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 PISDQ9UG56 409 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 MKL2Q9ULH7 1088 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 ERVK-19Q9WJR5 959 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 KCNK6Q9Y257 313 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 TMEM14AQ9Y6G1 99 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 COLEC10Q9Y6Z7 277 aa8.61□□□□□ -1.03
HDAC3-205ENST00000469550 TENM4Q6N022 2769 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 OR52A4PA6NMU1 304 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 PHYHO14832 338 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 IL2RAP01589 272 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 SFTPCP11686 197 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 CDKN2AP42771 156 aaKnown RBP8.6□□□□□ -1.03
HDAC3-205ENST00000469550 GPR3P46089 330 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 TRA2AQ13595 282 aaKnown RBP eCLIP8.6□□□□□ -1.03
HDAC3-205ENST00000469550 TAF13Q15543 124 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 PNLIPRP3Q17RR3 467 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 DEFB134Q4QY38 66 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 EMC4Q5J8M3 183 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 AVPI1Q5T686 147 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 YOD1Q5VVQ6 348 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-205ENST00000469550 FAHD2BQ6P2I3 314 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-205ENST00000469550 TMEM88Q6PEY1 159 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 TMPRSS9Q7Z410 1059 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 GTPBP8Q8N3Z3 284 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-205ENST00000469550 ZNF676Q8N7Q3 588 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 LRRC75AQ8NAA5 344 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 ZNF511Q8NB15 262 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 SLC30A7Q8NEW0 376 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 THAP6Q8TBB0 222 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 ARL11Q969Q4 196 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 ZBTB8AQ96BR9 441 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 RASD2Q96D21 266 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 FAHD2AQ96GK7 314 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 SCARF2Q96GP6 870 aaPredicted RBP8.6□□□□□ -1.03
HDAC3-205ENST00000469550 OR2A5Q96R48 311 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 LMF2Q9BU23 707 aaKnown RBP8.6□□□□□ -1.03
HDAC3-205ENST00000469550 ZNF768Q9H5H4 540 aaKnown RBP8.6□□□□□ -1.03
HDAC3-205ENST00000469550 SLC17A4Q9Y2C5 497 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 HIF3AQ9Y2N7 669 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 KLHDC2Q9Y2U9 406 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 SPACA6W5XKT8 324 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 AHCTF1Q8WYP5 2266 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 MYO18BQ8IUG5 2567 aa8.6□□□□□ -1.03
HDAC3-205ENST00000469550 B4DGG1 531 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 C9orf172C9J069 976 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 F5H0A9 414 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 NPIPB9F8W1W9 429 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 WISP1O95388 367 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 AMY2AP04746 511 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 CEACAM5P06731 702 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 CD14P08571 375 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ITGA5P08648 1049 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 FOLR2P14207 255 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ALOX5APP20292 161 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ZBTB25P24278 435 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 BLOC1S1P78537 153 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 SERTAD2Q14140 314 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 MEF2DQ14814 521 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 TGIF1Q15583 401 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 IL34Q6ZMJ4 242 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ABHD13Q7L211 337 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 TMED4Q7Z7H5 227 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 LYG2Q86SG7 212 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 SLC25A42Q86VD7 318 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 JAZF1Q86VZ6 243 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 SFTPA2Q8IWL1 248 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 INO80EQ8NBZ0 244 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 OR5AP2Q8NGF4 316 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 OR1J2Q8NGS2 313 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 OR8S1Q8NH09 359 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 SFT2D1Q8WV19 159 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 MITD1Q8WV92 249 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 RNF141Q8WVD5 230 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 PPP1R1CQ8WVI7 109 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 DVL3Q92997 716 aaPredicted RBP8.59□□□□□ -1.03
HDAC3-205ENST00000469550 SLC22A18Q96BI1 424 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 PIK3IP1Q96FE7 263 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 C4orf45Q96LM5 186 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 TWSG1Q9GZX9 223 aa8.59□□□□□ -1.03
HDAC3-205ENST00000469550 ATG5Q9H1Y0 275 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms