RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HSPB2A8KAH6 182 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 ZFAND5O76080 213 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 AKAIN1P0CW23 69 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 CCL4P13236 92 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 ABOP16442 354 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 RAP1BP61224 184 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 RAP1AP62834 184 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 HSPB2Q16082 182 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 C4orf46Q504U0 113 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 CHMP1BQ7LBR1 199 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 GABRG1Q8N1C3 465 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 PAQR4Q8N4S7 273 aaPredicted RBP16.97■□□□□ 0.31
VIM-203ENST00000469543 GNRHR2Q96P88 292 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 MRPL13Q9BYD1 178 aaKnown RBP16.97■□□□□ 0.31
VIM-203ENST00000469543 DEFB126Q9BYW3 111 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 GAREM1Q9H706 876 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 EXO5Q9H790 373 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 KLHL13Q9P2N7 655 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 ASH2LQ9UBL3 628 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 LHFPL6Q9Y693 200 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 CSF1P09603 554 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 SCGB2B2Q4G0G5 96 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 OR52W1Q6IF63 320 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 IDO2Q6ZQW0 420 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 ELMOD2Q8IZ81 293 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 OR13C9Q8NGT0 318 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 B3GALT5Q9Y2C3 310 aa16.97■□□□□ 0.31
VIM-203ENST00000469543 IGHV3-15A0A0B4J1V0 119 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 TNFRSF10AO00220 468 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 GOSR2O14653 212 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 ARPC5O15511 151 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 TMEM127O75204 238 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 P2RY4P51582 365 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 PMPCAQ10713 525 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 NAA40Q86UY6 237 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 OR10H5Q8NGA6 315 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 OR1J2Q8NGS2 313 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 PBOV1Q9GZY1 135 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 POFUT1Q9H488 388 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 KLK13Q9UKR3 277 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 PLSCR5A0PG75 271 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 M0R233 179 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 ZNF208O43345 1280 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 ZNF35P13682 527 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 CPN1P15169 458 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 ZNF813Q6ZN06 617 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 CDH24Q86UP0 819 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 ZNF775Q96BV0 537 aaPredicted RBP16.96■□□□□ 0.31
VIM-203ENST00000469543 CLEC4MQ9H2X3 399 aaPredicted RBP16.96■□□□□ 0.31
VIM-203ENST00000469543 ZNF230Q9UIE0 474 aaPredicted RBP16.96■□□□□ 0.31
VIM-203ENST00000469543 RHBDD3Q9Y3P4 386 aa16.96■□□□□ 0.31
VIM-203ENST00000469543 E9PLN8 166 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 TEX46H3BTG2 121 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 TOX3O15405 576 aaPredicted RBP16.95■□□□□ 0.3
VIM-203ENST00000469543 SYT7O43581 403 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 CLRN1P58418 232 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 UNC119Q13432 240 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 OR5L2Q8NGL0 311 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 OR6N1Q8NGY5 312 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 C15orf40Q8WUR7 153 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 MICU1Q9BPX6 476 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 GPN1Q9HCN4 374 aaPredicted RBP16.95■□□□□ 0.3
VIM-203ENST00000469543 SDHAF3Q9NRP4 125 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 ALKBH4Q9NXW9 302 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 B3GNT2Q9NY97 397 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 POLR1DQ9Y2S0 133 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 OR2M5A3KFT3 312 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 RAB3DO95716 219 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 AMY2AP04746 511 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 ISG15P05161 165 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 FAUP35544 74 aaKnown RBP16.95■□□□□ 0.3
VIM-203ENST00000469543 MMP16P51512 607 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 DNM1P34Q6PK57 102 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 C5orf46Q6UWT4 87 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 COMMD2Q86X83 199 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 LYPD6Q86Y78 171 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 UEVLDQ8IX04 471 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 FAM109AQ8N4B1 249 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 OR2M3Q8NG83 312 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 OR6M1Q8NGM8 313 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 TNFAIP8L1Q8WVP5 186 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 SFXN2Q96NB2 322 aa16.95■□□□□ 0.3
VIM-203ENST00000469543 UTP23Q9BRU9 249 aaKnown RBP16.95■□□□□ 0.3
VIM-203ENST00000469543 GDF2Q9UK05 429 aaPredicted RBP16.95■□□□□ 0.3
VIM-203ENST00000469543 RPS10-NUDT3A0A1W2PQS6 291 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 SCO1O75880 301 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 AQP8O94778 261 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 ZNF250P15622 560 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 CFPP27918 469 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 LAP3P28838 519 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 SCAND1P57086 179 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 SPICQ8N5J4 248 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 CHST4Q8NCG5 386 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 NUDCD2Q8WVJ2 157 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 SPACA9Q96E40 222 aaPredicted RBP16.94■□□□□ 0.3
VIM-203ENST00000469543 MRGPRX4Q96LA9 322 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 POM121CA8CG34 1229 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 LDLRAD4O15165 306 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 OR2A4O95047 310 aa16.94■□□□□ 0.3
VIM-203ENST00000469543 PGA4P0DJD7 388 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms