RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 COPS4Q9BT78 406 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 OR51B6Q9H340 312 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 DDX28Q9NUL7 540 aaKnown RBP17.07■□□□□ 0.32
COL9A3-204ENST00000463487 FAM118AQ9NWS6 357 aa17.07■□□□□ 0.32
COL9A3-204ENST00000463487 WARS2Q9UGM6 360 aaKnown RBP17.07■□□□□ 0.32
COL9A3-204ENST00000463487 ANKRD17O75179 2603 aaKnown RBP17.07■□□□□ 0.32
COL9A3-204ENST00000463487 ITPR2Q14571 2701 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 LOC100130705A0A1B0GUX0 176 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 GPRIN2O60269 458 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 APOC1P02654 83 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 LYNP07948 512 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 ERCC1P07992 297 aaPredicted RBP17.06■□□□□ 0.32
COL9A3-204ENST00000463487 GCH1P30793 250 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 NAA10P41227 235 aaPredicted RBP17.06■□□□□ 0.32
COL9A3-204ENST00000463487 RPS27P42677 84 aaKnown RBP17.06■□□□□ 0.32
COL9A3-204ENST00000463487 EVX1P49640 407 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 GRB2P62993 217 aaKnown RBP17.06■□□□□ 0.32
COL9A3-204ENST00000463487 TMED1Q13445 227 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 GGTLC2Q14390 218 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 MOGQ16653 247 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 ZNF718Q3SXZ3 478 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 TTC23Q5W5X9 447 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 OR5L1Q8NGL2 311 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 OTOSQ8NHW6 89 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 SLAMF6Q96DU3 332 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 MAP6Q96JE9 813 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 MNTQ99583 582 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 YIPF3Q9GZM5 350 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 CENPMQ9NSP4 180 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 LAMP5Q9UJQ1 280 aa17.06■□□□□ 0.32
COL9A3-204ENST00000463487 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.06■□□□□ 0.32
COL9A3-204ENST00000463487 CCDC182A6NF36 153 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 F5H5K5 113 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 SLC16A6O15403 523 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 SELENOFO60613 162 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 HSD11B1P28845 292 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 HTR1FP30939 366 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 WNT5AP41221 380 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 PPP1CBP62140 327 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 SNRPGP62308 76 aaKnown RBP17.05■□□□□ 0.32
COL9A3-204ENST00000463487 LRRC75A-AS1Q8N1F1 130 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 SYNPRQ8TBG9 265 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 APOBEC3DQ96AK3 386 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-204ENST00000463487 Q96MT0 163 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 FOXC2Q99958 501 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 DYNLRB1Q9NP97 96 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 HAO2Q9NYQ3 351 aa17.05■□□□□ 0.32
COL9A3-204ENST00000463487 HRNRQ86YZ3 2850 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-204ENST00000463487 A0A1W2PPW3 197 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 PHYHO14832 338 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 MT-ND5P03915 603 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 ATP6V1E1P36543 226 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 KLF3P57682 345 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-204ENST00000463487 SLC25A30Q5SVS4 291 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 C11orf71Q6IPW1 123 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 KCTD18Q6PI47 426 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-204ENST00000463487 RFPL4BQ6ZWI9 263 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-204ENST00000463487 ZNF101Q8IZC7 436 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 DHRSXQ8N5I4 330 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 ST7LQ8TDW4 575 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 THEM6Q8WUY1 208 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 CYGBQ8WWM9 190 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 IGFBPL1Q8WX77 278 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 SLC7A6Q92536 515 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 ZNF582Q96NG8 517 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-204ENST00000463487 ABHD6Q9BV23 337 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 CACNG6Q9BXT2 260 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 GSX2Q9BZM3 304 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 SP140LQ9H930 580 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 BARX1Q9HBU1 254 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-204ENST00000463487 PNRC2Q9NPJ4 139 aaKnown RBP17.04■□□□□ 0.32
COL9A3-204ENST00000463487 CLN6Q9NWW5 311 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 SLCO1C1Q9NYB5 712 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 DUSP13Q9UII6 198 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 ITGB1BP2Q9UKP3 347 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 NAV2Q8IVL1 2488 aa17.04■□□□□ 0.32
COL9A3-204ENST00000463487 CYSRT1A8MQ03 144 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 E9PQ18 207 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 H7C417 338 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 M0R135 149 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 OVOL3O00110 214 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 CD8AP01732 235 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 DBHP09172 617 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 H2BFMP0C1H6 154 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 ZNF250P15622 560 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 SLC6A9P48067 706 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 ART1P52961 327 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 MALLQ13021 153 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 SWI5Q1ZZU3 235 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 DRAM2Q6UX65 266 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 BCDIN3DQ7Z5W3 292 aaKnown RBP17.03■□□□□ 0.32
COL9A3-204ENST00000463487 SETD9Q8NE22 299 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 SNX33Q8WV41 574 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 RNF133Q8WVZ7 376 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 ASB17Q8WXJ9 295 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 ZNF799Q96GE5 643 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 KCNJ15Q99712 375 aa17.03■□□□□ 0.32
COL9A3-204ENST00000463487 ZNF701Q9NV72 531 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-204ENST00000463487 DNAJC27Q9NZQ0 273 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms