RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 CDK5R2Q13319 367 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 MEP1BQ16820 701 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 DCAF12L2Q5VW00 463 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 RPL13AP3Q6NVV1 102 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 ZNF620Q6ZNG0 422 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 SDR9C7Q8NEX9 313 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 OR4K13Q8NH42 304 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 ST7LQ8TDW4 575 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 APOBEC3DQ96AK3 386 aaPredicted RBP11.81□□□□□ -0.52
USP4-206ENST00000461553 SAMD8Q96LT4 415 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 NMNAT3Q96T66 252 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 IL1RAPQ9NPH3 570 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 G6PC2Q9NQR9 355 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 TMEM106BQ9NUM4 274 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 PTTG3PQ9NZH4 202 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 KLHL21Q9UJP4 597 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 STARD10Q9Y365 291 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 NPTNQ9Y639 398 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 LHFPL6Q9Y693 200 aa11.81□□□□□ -0.52
USP4-206ENST00000461553 J3QLI3 93 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 DCTN6O00399 190 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 PLPP2O43688 288 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 HLA-DQA2P01906 255 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 RAC2P15153 192 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 HIST1H1CP16403 213 aaKnown RBP11.8□□□□□ -0.52
USP4-206ENST00000461553 GATA3P23771 443 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 GSSP48637 474 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 MNAT1P51948 309 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 COX10Q12887 443 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 TSPAN31Q12999 210 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 SLC36A3Q495N2 470 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 PGBD2Q6P3X8 592 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 OR5AS1Q8N127 324 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 SPICQ8N5J4 248 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 SLC26A10Q8NG04 563 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 OR2AJ1Q8NGZ0 328 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 GNPDA2Q8TDQ7 276 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 PTP4A1Q93096 173 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 FN3KQ9H479 309 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 IL19Q9UHD0 177 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 PCDHB10Q9UN67 800 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 B9D1Q9UPM9 204 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 CDH10Q9Y6N8 788 aa11.8□□□□□ -0.52
USP4-206ENST00000461553 LOC105371242A0A075B767 164 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 A0A0A6YYJ9 748 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 IDH3BO43837 385 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 KRT36O76013 467 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 IGHV2-70P01814 119 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 ATP6V1B2P21281 511 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 EPHA1P21709 976 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 ERFP50548 548 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 HIST1H3AP68431 136 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 HLXQ14774 488 aaPredicted RBP11.79□□□□□ -0.52
USP4-206ENST00000461553 SPRNQ5BIV9 151 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 CLEC12AQ5QGZ9 265 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 HIST2H3PS2Q5TEC6 136 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 CORO6Q6QEF8 472 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 CYP2R1Q6VVX0 501 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 FBXW12Q6X9E4 464 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 Q6ZR03 302 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 HIST2H3AQ71DI3 136 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 PIGWQ7Z7B1 504 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 LINC00346Q8IVM7 164 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 OR6V1Q8N148 313 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 KLHL36Q8N4N3 616 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 LINC00471Q8N535 108 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 ZNF283Q8N7M2 679 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 ZNF418Q8TF45 676 aaPredicted RBP11.79□□□□□ -0.52
USP4-206ENST00000461553 ITLN1Q8WWA0 313 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 HAVCR1Q96D42 359 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 OR2V2Q96R30 315 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 ATF6BQ99941 703 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 CDADC1Q9BWV3 514 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 SRA1Q9HD15 236 aaKnown RBP11.79□□□□□ -0.52
USP4-206ENST00000461553 PPP1R3CQ9UQK1 317 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 LYVE1Q9Y5Y7 322 aa11.79□□□□□ -0.52
USP4-206ENST00000461553 HAX1O00165 279 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 TNFRSF11BO00300 401 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 FOXH1O75593 365 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 BTG1P62324 171 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 LCN2P80188 198 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP4-206ENST00000461553 TMEM155Q4W5P6 130 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 OR2T2Q6IF00 324 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 SLC27A4Q6P1M0 643 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 CFAP77Q6ZQR2 320 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 C1QL2Q7Z5L3 287 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 ZBTB46Q86UZ6 589 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 ATG16L2Q8NAA4 619 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 OR10AD1Q8NGE0 317 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 OR9Q2Q8NGE9 314 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 OR52E2Q8NGJ4 325 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 PITX2Q99697 317 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 TMPRSS13Q9BYE2 586 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 MUC13Q9H3R2 512 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 EGLN3Q9H6Z9 239 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 TBC1D23Q9NUY8 699 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 DCAF16Q9NXF7 216 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 ACTR3BQ9P1U1 418 aa11.78□□□□□ -0.52
USP4-206ENST00000461553 OR6C68A6NDL8 312 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms