RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ZNF224Q9NZL3 707 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 NDRG3Q9UGV2 375 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 ATP23Q9Y6H3 246 aa6.65□□□□□ -1.34
SYNE1-213ENST00000448038 GLSO94925 669 aaPredicted RBP6.65□□□□□ -1.35
SYNE1-213ENST00000448038 NTN1O95631 604 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 SERPINE2P07093 398 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 GDNFP39905 211 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 CDKN2AP42771 156 aaKnown RBP6.65□□□□□ -1.35
SYNE1-213ENST00000448038 PMPCAQ10713 525 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 TPBGQ13641 420 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 OR8B8Q15620 311 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF695Q8IW36 515 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 SULF2Q8IWU5 870 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 C17orf47Q8NEP4 570 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 OR8D4Q8NGM9 314 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 OR4K15Q8NH41 348 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 RTL8AQ9BWD3 113 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 ZCCHC4Q9H5U6 513 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 MBD2Q9UBB5 411 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 FBXL2Q9UKC9 423 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 CENPVL1A0A0U1RR11 272 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 SLC22A5O76082 557 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 ACTL6BO94805 426 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 PRSS23O95084 383 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 IGKV1D-16P01601 117 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 MAGEA5P43359 124 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 MECP2P51608 486 aaKnown RBP6.65□□□□□ -1.35
SYNE1-213ENST00000448038 RAC3P60763 192 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 DOC2BQ14184 412 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF700Q9H0M5 742 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 BANF2Q9H503 90 aa6.65□□□□□ -1.35
SYNE1-213ENST00000448038 SLC22A23A1A5C7 686 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 BET1O15155 118 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 CELA2AP08217 269 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 ADGRG3Q86Y34 549 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 BATF2Q8N1L9 274 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 FGF11Q92914 225 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 OR8B4Q96RC9 309 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 NICN1Q9BSH3 213 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 NOX3Q9HBY0 568 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 PTTG3PQ9NZH4 202 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 MRPS18BQ9Y676 258 aaKnown RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 SVILO95425 2214 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 GOSR2O14653 212 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 GFRA3O60609 400 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 GPANK1O95872 356 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 NR4A2P43354 598 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 ARF1P84077 181 aaKnown RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 FGL1Q08830 312 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 CSRP2Q16527 193 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 LTC4SQ16873 150 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 MEX3BQ6ZN04 569 aaKnown RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 SYT9Q86SS6 491 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 EMG1Q92979 244 aaKnown RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 MCHR2Q969V1 340 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 SPACA5Q96QH8 159 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 TGIF2Q9GZN2 237 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 GMEB1Q9Y692 573 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 CKAP5Q14008 2032 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 SCN2AQ99250 2005 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 IGHV1-45A0A0A0MS14 117 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 PRAF2O60831 178 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 NRASP01111 189 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 PCSK6P29122 969 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 RAB1AP62820 205 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 LYPD4Q6UWN0 246 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 OR2M3Q8NG83 312 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 RAB39BQ96DA2 213 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 UFSP2Q9NUQ7 469 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 LRP12Q9Y561 859 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 DOCK4Q8N1I0 1966 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 IGHV3-64DA0A0J9YX35 117 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 M0R233 179 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 SNAPC5O75971 98 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF883P0CG24 379 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 CDK2P24941 298 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 RAD52P43351 418 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 IL13RA1P78552 427 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 GTPBP8Q8N3Z3 284 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 ZNF709Q8N972 641 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 KCNJ15Q99712 375 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 JAM3Q9BX67 310 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 EGLN1Q9GZT9 426 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 PPA2Q9H2U2 334 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 SLC52A3Q9NQ40 469 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 B3GNT2Q9NY97 397 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 NCOR1O75376 2440 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 FITM1A5D6W6 292 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 LRRC30A6NM36 301 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 F5H0A9 414 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 SC5DO75845 299 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 BPNT1O95861 308 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 EPHA1P21709 976 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 EIF2S3P41091 472 aaKnown RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 MVDP53602 400 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 INSM1Q01101 510 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 FAM109AQ8N4B1 249 aa6.64□□□□□ -1.35
SYNE1-213ENST00000448038 FAM83FQ8NEG4 500 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 VRK1Q99986 396 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-213ENST00000448038 OR2S2Q9NQN1 319 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms