RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NAAAQ02083 359 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 ROM1Q03395 351 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 ZNF85Q03923 595 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 EGR3Q06889 387 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 NCMAPQ5T1S8 102 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 PLEKHG7Q6ZR37 379 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 MYPOPQ86VE0 399 aaPredicted RBP13.69□□□□□ -0.22
USP40-206ENST00000443711 SNX33Q8WV41 574 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 SPTSSAQ969W0 71 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 PLPPR2Q96GM1 343 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 POM121L2Q96KW2 1035 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 OR8B4Q96RC9 309 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 DCLRE1CQ96SD1 692 aaKnown RBP13.69□□□□□ -0.22
USP40-206ENST00000443711 RHNO1Q9BSD3 238 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 JAM3Q9BX67 310 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 MROQ9BYG7 248 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 DUSP21Q9H596 190 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 NIPAL2Q9H841 368 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 CHCHD3Q9NX63 227 aaKnown RBP13.69□□□□□ -0.22
USP40-206ENST00000443711 SLCO1C1Q9NYB5 712 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 IKZF2Q9UKS7 526 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 EXOSC1Q9Y3B2 195 aaKnown RBP13.69□□□□□ -0.22
USP40-206ENST00000443711 CADP27708 2225 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 PKDREJQ9NTG1 2253 aa13.69□□□□□ -0.22
USP40-206ENST00000443711 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.68□□□□□ -0.22
USP40-206ENST00000443711 C5orf49A4QMS7 147 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 GOSR1O95249 250 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 APOC1P02654 83 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 KRT8P05787 483 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 CDK1P06493 297 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 CD3EP07766 207 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 MYL12AP19105 171 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 CCNOP22674 350 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 HSD11B1P28845 292 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 OPRL1P41146 370 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 TPTEP56180 551 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 GALK2Q01415 458 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 BSPH1Q075Z2 132 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 GALEQ14376 348 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 LRRN1Q6UXK5 716 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 SSX6Q7RTT6 188 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 LHFPL3Q86UP9 236 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 ZNF679Q8IYX0 411 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 RFLNBQ8N5W9 214 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 KCNJ15Q99712 375 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 TTTY10Q9BZA0 68 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 ERVK13-1Q9NX77 482 aa13.68□□□□□ -0.22
USP40-206ENST00000443711 IGHV2OR16-5A0A0B4J2B6 119 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 METTL15A6NJ78 407 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 DEFB108AA8MXU0 73 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 SULT1C4O75897 302 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 TACSTD2P09758 323 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 CCL2P13500 99 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 ZNF35P13682 527 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 EEF1B2P24534 225 aaKnown RBP13.67□□□□□ -0.22
USP40-206ENST00000443711 RIDAP52758 137 aaKnown RBP13.67□□□□□ -0.22
USP40-206ENST00000443711 SLC35A2P78381 396 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 RSPO1Q2MKA7 263 aaPredicted RBP13.67□□□□□ -0.22
USP40-206ENST00000443711 KRTAP27-1Q3LI81 207 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 ARL9Q6T311 187 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 KCTD20Q7Z5Y7 419 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 EGFL6Q8IUX8 553 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 ZNF283Q8N7M2 679 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 SLC7A6Q92536 515 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 PIK3IP1Q96FE7 263 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 RADILQ96JH8 1075 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 ALG8Q9BVK2 526 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 ELOVL3Q9HB03 270 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 PAK1IP1Q9NWT1 392 aaPredicted RBP13.67□□□□□ -0.22
USP40-206ENST00000443711 ERVK-18Q9QC07 812 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 EIF3KQ9UBQ5 218 aaKnown RBP13.67□□□□□ -0.22
USP40-206ENST00000443711 PLEKHB1Q9UF11 243 aaPredicted RBP13.67□□□□□ -0.22
USP40-206ENST00000443711 GRIP1Q9Y3R0 1128 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 SPEF1Q9Y4P9 236 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 LRP12Q9Y561 859 aa13.67□□□□□ -0.22
USP40-206ENST00000443711 PRR32B1ATL7 298 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 F5H5K5 113 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 PSMD9O00233 223 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 ABCD4O14678 606 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 MAGEB4O15481 346 aaPredicted RBP13.66□□□□□ -0.22
USP40-206ENST00000443711 SIAH2O43255 324 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 RGS10O43665 173 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 DBHP09172 617 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 ACSM4P0C7M7 580 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 LIMS3P0CW19 117 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 LIMS4P0CW20 117 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 CALCRP30988 508 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 OTX1P32242 354 aaPredicted RBP13.66□□□□□ -0.22
USP40-206ENST00000443711 DCTDP32321 178 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 RGS6P49758 472 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 ETV1P50549 477 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 PRKXP51817 358 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 GABARAPL2P60520 117 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 ACTA2P62736 377 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 ACTG2P63267 376 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 MVKQ03426 396 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 CDONQ4KMG0 1287 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 ZNF684Q5T5D7 378 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 DRAM2Q6UX65 266 aa13.66□□□□□ -0.22
USP40-206ENST00000443711 UNQ6126/PRO20091Q6UXV3 157 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 428.4 ms