RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 BLVRAP53004 296 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 RPS7P62081 194 aaKnown RBP15.99■□□□□ 0.15
SHH-203ENST00000435425 LINC01590Q5TEZ4 76 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 CLEC2AQ6UVW9 174 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 CXXC5Q7LFL8 322 aaKnown RBP15.99■□□□□ 0.15
SHH-203ENST00000435425 DCXRQ7Z4W1 244 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 BBS1Q8NFJ9 593 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 OR6N2Q8NGY6 317 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 KLF14Q8TD94 323 aaPredicted RBP15.99■□□□□ 0.15
SHH-203ENST00000435425 IPCEF1Q8WWN9 437 aaPredicted RBP15.99■□□□□ 0.15
SHH-203ENST00000435425 ATF6BQ99941 703 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 RHNO1Q9BSD3 238 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 OSBPL10Q9BXB5 764 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 MS4A5Q9H3V2 200 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 RIBC2Q9H4K1 309 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 TMEFF2Q9UIK5 374 aaPredicted RBP15.99■□□□□ 0.15
SHH-203ENST00000435425 STARD10Q9Y365 291 aa15.99■□□□□ 0.15
SHH-203ENST00000435425 ANKRD65E5RJM6 399 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 RNF223E7ERA6 249 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 M0R129 80 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 SPATC1Q76KD6 591 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 SNX33Q8WV41 574 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 C18orf12Q96KH6 178 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 INTS14Q96SY0 518 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 PNRC2Q9NPJ4 139 aaKnown RBP15.98■□□□□ 0.15
SHH-203ENST00000435425 CENPMQ9NSP4 180 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 TBCCD1Q9NVR7 557 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 SLCO1C1Q9NYB5 712 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 PTTG3PQ9NZH4 202 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 ATPIF1Q9UII2 106 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 GPR160Q9UJ42 338 aa15.98■□□□□ 0.15
SHH-203ENST00000435425 MAP1AP78559 2803 aaPredicted RBP15.97■□□□□ 0.15
SHH-203ENST00000435425 CELSR1Q9NYQ6 3014 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 IGLV3-9A0A075B6K5 115 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 PRKYO43930 277 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 BAG2O95816 211 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 POLR2IP36954 125 aaKnown RBP15.97■□□□□ 0.15
SHH-203ENST00000435425 PPP2R2BQ00005 443 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 APOFQ13790 326 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 EIF2B1Q14232 305 aaKnown RBP15.97■□□□□ 0.15
SHH-203ENST00000435425 TAF13Q15543 124 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 RSPO1Q2MKA7 263 aaPredicted RBP15.97■□□□□ 0.15
SHH-203ENST00000435425 SLX4IPQ5VYV7 408 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 NAA40Q86UY6 237 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 MAPK1IP1LQ8NDC0 245 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 OR10S1Q8NGN2 331 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 NEU4Q8WWR8 484 aaPredicted RBP15.97■□□□□ 0.15
SHH-203ENST00000435425 FAM168AQ92567 244 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 GTF3AQ92664 365 aaKnown RBP15.97■□□□□ 0.15
SHH-203ENST00000435425 STMN2Q93045 179 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 DCLRE1CQ96SD1 692 aaKnown RBP15.97■□□□□ 0.15
SHH-203ENST00000435425 RBM4BQ9BQ04 359 aaKnown RBP15.97■□□□□ 0.15
SHH-203ENST00000435425 PRRG3Q9BZD7 231 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 DLL4Q9NR61 685 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 ENOPH1Q9UHY7 261 aa15.97■□□□□ 0.15
SHH-203ENST00000435425 F8P00451 2351 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 IGHV4-30-2A0A087WSY4 118 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 ZAR1LA6NP61 321 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 EI24O14681 340 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 SELENOFO60613 162 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 ICMTO60725 284 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 IGHV3-13P01766 116 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 INHBBP09529 407 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 PDLIM4P50479 330 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 ECH1Q13011 328 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 MOGQ16653 247 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 ZSCAN26Q16670 478 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 TMEM255AQ5JRV8 349 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 MBNL2Q5VZF2 373 aaKnown RBP15.96■□□□□ 0.15
SHH-203ENST00000435425 DNM1P46Q6ZS02 220 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 DPY19L4Q7Z388 723 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 C1orf174Q8IYL3 243 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 TCEANCQ8N8B7 351 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 SLAMF6Q96DU3 332 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 SMR3AQ99954 134 aa15.96■□□□□ 0.15
SHH-203ENST00000435425 HIVEP1P15822 2718 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 LYNX1G3V0Z9 82 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 PRODHO43272 600 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 TLX2O43763 284 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 TIMM8AO60220 97 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 LCATP04180 440 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 ACSM4P0C7M7 580 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 LYNX1P0DP58 116 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 DAOP14920 347 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 NAA10P41227 235 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 RGS6P49758 472 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 TPTEP56180 551 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 DSCR9P59020 149 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 GABPB1Q06547 395 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 HLXQ14774 488 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 ZIK1Q3SY52 487 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 TEX30Q5JUR7 227 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 C12orf73Q69YU5 71 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 BCDIN3DQ7Z5W3 292 aaKnown RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 OR5L1Q8NGL2 311 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 APOBEC3DQ96AK3 386 aaPredicted RBP15.95■□□□□ 0.14
SHH-203ENST00000435425 CMBLQ96DG6 245 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 IL4I1Q96RQ9 567 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 COPS4Q9BT78 406 aa15.95■□□□□ 0.14
SHH-203ENST00000435425 REG4Q9BYZ8 158 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms