RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 LRR1Q96L50 414 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PPP1R2P1Q96PQ5 205 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 QKIQ96PU8 341 aaKnown RBP eCLIP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 CSPG4P5Q96PW8 444 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 OR5M11Q96RB7 305 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 DCUN1D5Q9BTE7 237 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 SLC17A9Q9BYT1 436 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ZYG11BQ9C0D3 744 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 WDR13Q9H1Z4 485 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PIGUQ9H490 435 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 CXorf21Q9HAI6 301 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PLEKHA3Q9HB20 300 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 NRN1Q9NPD7 142 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 AGPAT4Q9NRZ5 378 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PLCXD1Q9NUJ7 323 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 MED9Q9NWA0 146 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PAK1IP1Q9NWT1 392 aaPredicted RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 C1orf123Q9NWV4 160 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PTTG3PQ9NZH4 202 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 BTNL2Q9UIR0 455 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 RIMS3Q9UJD0 308 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF229Q9UJW7 825 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF346Q9UL40 294 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 PACSIN2Q9UNF0 486 aaPredicted RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 CA5BQ9Y2D0 317 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 EXOSC1Q9Y3B2 195 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 SAMHD1Q9Y3Z3 626 aaKnown RBP3.38□□□□□ -1.87
HMGB3-203ENST00000430118 WDR45Q9Y484 360 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 HSPE1-MOB4S4R3N1 261 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 SPACA6W5XKT8 324 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ICE1Q9Y2F5 2266 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 ITPR2Q14571 2701 aa3.38□□□□□ -1.87
HMGB3-203ENST00000430118 COL27A1Q8IZC6 1860 aaPredicted RBP3.37□□□□□ -1.87
HMGB3-203ENST00000430118 NF1P21359 2839 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 IGHV3-38A0A0C4DH36 116 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 XKRY2A2RUG3 117 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 PDZK1P1A8MUH7 402 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 MPTX1A8MV57 137 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 HACD1B0YJ81 288 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 KRBOX1C9JBD0 128 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 IMPA2O14732 288 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 STX7O15400 261 aaKnown RBP3.37□□□□□ -1.87
HMGB3-203ENST00000430118 DUX1O43812 170 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 UGT2B17O75795 530 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 SORBS2O94875 1100 aaKnown RBP3.37□□□□□ -1.87
HMGB3-203ENST00000430118 IGSF6O95976 241 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 IGLV2-11P01706 119 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 IGHG1P01857 330 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 APOA1P02647 267 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 SNRPCP09234 159 aaKnown RBP3.37□□□□□ -1.87
HMGB3-203ENST00000430118 RBP1P09455 135 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 PATE4P0C8F1 98 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 RNF224P0DH78 156 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 ADRB3P13945 408 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 CBR1P16152 277 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 TBXA2RP21731 343 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 PDHA2P29803 388 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 FOXN2P32314 431 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 MMP12P39900 470 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 OPRL1P41146 370 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 ACTR1BP42025 376 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 KIR3DL2P43630 455 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 VEGFCP49767 419 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 STK19P49842 368 aaPredicted RBP3.37□□□□□ -1.87
HMGB3-203ENST00000430118 PLK1P53350 603 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 UGT2B15P54855 530 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 LINC01547P58512 204 aaPredicted RBP3.37□□□□□ -1.87
HMGB3-203ENST00000430118 DEFA1P59665 94 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 DEFA3P59666 94 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 PFN3P60673 137 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 CAV1Q03135 178 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 CYP24A1Q07973 514 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 RGS1Q08116 209 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 C1orf61Q13536 156 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 CUL2Q13617 745 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 FHL1Q13642 323 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 KCNJ11Q14654 390 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 ZMYND11Q15326 602 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 CD226Q15762 336 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 ECSCRQ19T08 205 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 ZNF876PQ49A33 203 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 VWA2Q5GFL6 755 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 DCST2Q5T1A1 773 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 C6orf52Q5T4I8 152 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 PIP5KL1Q5T9C9 394 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 LRRC66Q68CR7 880 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 PWWP2BQ6NUJ5 590 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 ARHGAP11AQ6P4F7 1023 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 Q6ZPB1 254 aaPredicted RBP3.37□□□□□ -1.87
HMGB3-203ENST00000430118 RTL4Q6ZR62 310 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 CEACAM19Q7Z692 300 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 SCD5Q86SK9 330 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 GALNT10Q86SR1 603 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 NT5DC3Q86UY8 548 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 UBQLNLQ8IYU4 475 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 ENTHD1Q8IYW4 607 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 SYCE1Q8N0S2 351 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 PDIK1LQ8N165 341 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 LRRC75A-AS1Q8N1F1 130 aa3.37□□□□□ -1.87
HMGB3-203ENST00000430118 EIF4E3Q8N5X7 224 aaKnown RBP3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms