RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 NME4O00746 187 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 EEF1E1O43324 174 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 XPNPEP2O43895 674 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TPST2O60704 377 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GAGE7O76087 117 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GOSR1O95249 250 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OPN1SWP03999 348 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GAGE12FP0CL80 117 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GAGE12GP0CL81 117 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GAGE12IP0CL82 117 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 THRBP10828 461 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 HLA-DOBP13765 273 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CALB2P22676 271 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 HTR2AP28223 471 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 IFNA8P32881 189 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CRYBA2P53672 197 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ISL1P61371 349 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SIRPAP78324 504 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 HOXC5Q00444 222 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 RASGEF1BQ0VAM2 473 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GAGE1Q13065 139 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GAGE4Q13068 117 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CEACAM7Q14002 265 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF672Q499Z4 452 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CYBRD1Q53TN4 286 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SAMD4BQ5PRF9 694 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM225Q6GV28 225 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GLYATQ6IB77 296 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 KCTD18Q6PI47 426 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 PAQR6Q6TCH4 344 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 PLXDC2Q6UX71 529 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 COMTD1Q86VU5 262 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CARM1Q86X55 608 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TUSC5Q8IXB3 177 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ARHGAP24Q8N264 748 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SMYD1Q8NB12 490 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CSNK2A3Q8NEV1 391 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OR6T1Q8NGN1 323 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 C14orf79Q96F83 325 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 DACH2Q96NX9 599 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CDRT15Q96T59 188 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 KCTD14Q9BQ13 255 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 PSD2Q9BQI7 771 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM43Q9BTV4 400 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SLC19A3Q9BZV2 496 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OR10A4Q9H209 315 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ADA2Q9NZK5 511 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 EMC3Q9P0I2 261 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CD300AQ9UGN4 299 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 RASD1Q9Y272 281 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 B3GALT5Q9Y2C3 310 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SH3GLB1Q9Y371 365 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 DIDO1Q9BTC0 2240 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 NCOA6Q14686 2063 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CFAP47Q6ZTR5 3102 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 FREM3P0C091 2139 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ATMQ13315 3056 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 MAGEA13PA6NCF6 341 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TUBAL3A6NHL2 446 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OR6C65A6NJZ3 312 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF716A6NP11 495 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 FTCDNL1E5RQL4 147 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 M0QZ24 198 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CASKO14936 926 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 CHP2O43745 196 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OR5F1O95221 314 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 LYPD3O95274 346 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 MT-ATP6P00846 226 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 MYOD1P15172 320 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 GGT1P19440 569 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 PSMB1P20618 241 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 AGTR1P30556 359 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 RBM34P42696 430 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OR3A2P47893 321 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 FUT6P51993 359 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SEC61BP60468 96 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ST3GAL3Q11203 375 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 BNIP2Q12982 314 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SLC17A1Q14916 467 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 P2RY6Q15077 328 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OR7A5Q15622 319 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 NPTX1Q15818 432 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 LRRC23Q53EV4 343 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 IFI44LQ53G44 452 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OTUD3Q5T2D3 398 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 C1QTNF12Q5T7M4 302 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TTC33Q6PID6 262 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 UNQ6126/PRO20091Q6UXV3 157 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 SSX8Q7RTT4 187 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TRPM8Q7Z2W7 1104 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 NUFIP2Q7Z417 695 aaKnown RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 LUZP2Q86TE4 346 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF100Q8IYN0 542 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 DEFB107AQ8IZN7 70 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 TMEM99Q8N816 258 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OR4D11Q8NGI4 311 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 OR1J2Q8NGS2 313 aa2.16□□□□□ -2.06
VPS13A-208ENST00000423463 VANGL1Q8TAA9 524 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-208ENST00000423463 ADAMTS16Q8TE57 1224 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms