RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 RSPO1Q2MKA7 263 aaPredicted RBP6.75□□□□□ -1.33
VIM-202ENST00000421459 PRAMEF6Q5VXH4 476 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 HIST2H2BDQ6DRA6 164 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 CORO6Q6QEF8 472 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 BTNL3Q6UXE8 466 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 LRRN1Q6UXK5 716 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 ZNF841Q6ZN19 808 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 SYT9Q86SS6 491 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 NAA40Q86UY6 237 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 C1QL4Q86Z23 238 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 C1orf174Q8IYL3 243 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 FITM2Q8N6M3 262 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 NPEPL1Q8NDH3 523 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 OR8G5Q8NG78 346 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 OR1F12Q8NHA8 337 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 WFDC12Q8WWY7 111 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 ZDHHC16Q969W1 377 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 TSSK2Q96PF2 358 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 CCT8L2Q96SF2 557 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 NUDT16L1Q9BRJ7 211 aaKnown RBP6.75□□□□□ -1.33
VIM-202ENST00000421459 POLR2J2Q9GZM3 115 aaKnown RBP6.75□□□□□ -1.33
VIM-202ENST00000421459 SLITRK2Q9H156 845 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 POLR2J3Q9H1A7 115 aaKnown RBP6.75□□□□□ -1.33
VIM-202ENST00000421459 RASSF4Q9H2L5 321 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 ZMAT3Q9HA38 289 aaKnown RBP6.75□□□□□ -1.33
VIM-202ENST00000421459 LRCH1Q9Y2L9 728 aa6.75□□□□□ -1.33
VIM-202ENST00000421459 TEX13CA0A0J9YWL9 993 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 LOC100653049A0A140TA62 436 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 PRSS37A4D1T9 235 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 GMNCA6NCL1 334 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 SRRM5B3KS81 715 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 DCTN6O00399 190 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 MRASO14807 208 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 SURF4O15260 269 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 KRT34O76011 436 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 CD14P08571 375 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 NR2C1P13056 603 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 RAC2P15153 192 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 ANOS1P23352 680 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 PITPNBP48739 271 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 CENPAP49450 140 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 RAG2P55895 527 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 SELENOWP63302 87 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 PRB3Q04118 309 aaPredicted RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 SCRN3Q0VDG4 424 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 POU4F2Q12837 409 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 MAB21L1Q13394 359 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 MPPED2Q15777 294 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 ZNF404Q494X3 552 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 WDR25Q64LD2 544 aaPredicted RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 SFRP4Q6FHJ7 346 aaPredicted RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 BRICD5Q6PL45 260 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 FBXW12Q6X9E4 464 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 Q6YL49 198 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 ZNF730Q6ZMV8 503 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 PTCHD4Q6ZW05 846 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 FAM122BQ7Z309 247 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 TSEN54Q7Z6J9 526 aaKnown RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 PDZD9Q8IXQ8 264 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 MUC20Q8N307 709 aaPredicted RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 BOLLQ8N9W6 283 aaKnown RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 TSPEARQ8WU66 669 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 NEIL1Q96FI4 390 aaPredicted RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 FAM46AQ96IP4 442 aaKnown RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 PRRC1Q96M27 445 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 ZNF582Q96NG8 517 aaPredicted RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 ZNF570Q96NI8 536 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 SLC30A2Q9BRI3 323 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 PCGF1Q9BSM1 259 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 FNDC11Q9BVV2 318 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 TMEM120AQ9BXJ8 343 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 SYT4Q9H2B2 425 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 UFSP2Q9NUQ7 469 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 INTS9Q9NV88 658 aaKnown RBP6.74□□□□□ -1.33
VIM-202ENST00000421459 CMTM6Q9NX76 183 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 GRHPRQ9UBQ7 328 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 CTSZQ9UBR2 303 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 MIOXQ9UGB7 285 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 TMCC3Q9ULS5 477 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 MMP24Q9Y5R2 645 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 TANC2Q9HCD6 1990 aa6.74□□□□□ -1.33
VIM-202ENST00000421459 RYR3Q15413 4870 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 CENPVL3A0A0U1RRI6 287 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 C5orf63A6NC05 138 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 FAM220BPB1ANY3 271 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 SOCS2O14508 198 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 XKRYO14609 159 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 EDF1O60869 148 aaKnown RBP6.73□□□□□ -1.33
VIM-202ENST00000421459 FAM20BO75063 409 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 FCN3O75636 299 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 IGHV4-59P01825 116 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 MELTFP08582 738 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 PPIAL4GP0DN37 164 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 FPR3P25089 353 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 CDKN2AP42771 156 aaKnown RBP6.73□□□□□ -1.33
VIM-202ENST00000421459 SRP9P49458 86 aaKnown RBP6.73□□□□□ -1.33
VIM-202ENST00000421459 FXYD6P3P58550 94 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 ELF3P78545 371 aaPredicted RBP6.73□□□□□ -1.33
VIM-202ENST00000421459 KLF10Q13118 480 aa6.73□□□□□ -1.33
VIM-202ENST00000421459 AQP6Q13520 282 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms