RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MS4A18Q3C1V0 323 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 GLT8D1Q68CQ7 371 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 ZNF704Q6ZNC4 412 aaPredicted RBP13.19□□□□□ -0.3
USP4-203ENST00000415188 SHISA6Q6ZSJ9 500 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 HDDC2Q7Z4H3 204 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 SLC26A10Q8NG04 563 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 OR11H7Q8NGC8 314 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 OR10AC1Q8NH08 325 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 KCNK17Q96T54 332 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 PPP4R1LQ9P1A2 415 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 NPTNQ9Y639 398 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 PTPN13Q12923 2485 aa13.19□□□□□ -0.3
USP4-203ENST00000415188 LIPT2A6NK58 231 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 A6NL46 340 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 SRSF10O75494 262 aaKnown RBP13.18□□□□□ -0.3
USP4-203ENST00000415188 KLF7O75840 302 aaPredicted RBP13.18□□□□□ -0.3
USP4-203ENST00000415188 CEACAM4O75871 244 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 IL5P05113 134 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 ISG15P05161 165 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 CSF1P09603 554 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 FBXO45P0C2W1 286 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 FKBP2P26885 142 aaKnown RBP13.18□□□□□ -0.3
USP4-203ENST00000415188 OTX2P32243 289 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 RPS27P42677 84 aaKnown RBP13.18□□□□□ -0.3
USP4-203ENST00000415188 MECP2P51608 486 aaKnown RBP13.18□□□□□ -0.3
USP4-203ENST00000415188 ZNF41P51814 821 aaPredicted RBP13.18□□□□□ -0.3
USP4-203ENST00000415188 FOXF1Q12946 379 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 MELKQ14680 651 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 OR7A5Q15622 319 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 LAMTOR1Q6IAA8 161 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 FAM166AQ6J272 317 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 SLC35D2Q76EJ3 337 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 GLB1L2Q8IW92 636 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 FAM109AQ8N4B1 249 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 C9orf62Q8N4C0 152 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 FDCSPQ8NFU4 85 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 RADILQ96JH8 1075 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 SERINC1Q9NRX5 453 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 KLHL13Q9P2N7 655 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 SCP2D1Q9UJQ7 156 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 ZNF222Q9UK12 451 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 NXT1Q9UKK6 140 aaKnown RBP13.18□□□□□ -0.3
USP4-203ENST00000415188 COA3Q9Y2R0 106 aaPredicted RBP13.18□□□□□ -0.3
USP4-203ENST00000415188 LRP12Q9Y561 859 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 DOPEY2Q9Y3R5 2298 aa13.18□□□□□ -0.3
USP4-203ENST00000415188 A0A0A6YYH2 397 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 GGT3PA6NGU5 568 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 A6NJ64 397 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 TMEM200CA6NKL6 621 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 H7C417 338 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 IGFBP3P17936 291 aaPredicted RBP13.17□□□□□ -0.3
USP4-203ENST00000415188 HSF1Q00613 529 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 SRSF1Q07955 248 aaKnown RBP eCLIP13.17□□□□□ -0.3
USP4-203ENST00000415188 TMEM244Q5VVB8 128 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 TMEM225Q6GV28 225 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 LYPD8Q6UX82 237 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 UTS2BQ765I0 119 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 SERPINA12Q8IW75 414 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 DNAAF1Q8NEP3 725 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 OR11G2Q8NGC1 345 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 OR51A4Q8NGJ6 313 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 GPR137Q96N19 417 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 CRB3Q9BUF7 120 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 GPN1Q9HCN4 374 aaPredicted RBP13.17□□□□□ -0.3
USP4-203ENST00000415188 RYDENQ9NUL5 291 aaKnown RBP13.17□□□□□ -0.3
USP4-203ENST00000415188 KLRF1Q9NZS2 232 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 MTFP1Q9UDX5 166 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 ING1Q9UK53 422 aaPredicted RBP13.17□□□□□ -0.3
USP4-203ENST00000415188 HHLA2Q9UM44 414 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 PTRH2Q9Y3E5 179 aaKnown RBP13.17□□□□□ -0.3
USP4-203ENST00000415188 HSPB11Q9Y547 144 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 WIF1Q9Y5W5 379 aa13.17□□□□□ -0.3
USP4-203ENST00000415188 SNRPGP15A8MWD9 76 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 MASP2O00187 686 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 SULT1C2O00338 296 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 SSNA1O43805 119 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 GMDSO60547 372 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 CTAG2O75638 210 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 RBBP9O75884 186 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 ALX3O95076 343 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 NDUFB6O95139 128 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 UBCP0CG48 685 aaKnown RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 IFNGR1P15260 489 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 DCTDP32321 178 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 OR7E24Q6IFN5 339 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 NDUFAF7Q7L592 441 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 SPICQ8N5J4 248 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 NKAIN3Q8N8D7 197 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 OR6M1Q8NGM8 313 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 ZNF431Q8TF32 576 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 SLC25A43Q8WUT9 341 aaPredicted RBP13.16□□□□□ -0.3
USP4-203ENST00000415188 ASB5Q8WWX0 329 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 FAM3DQ96BQ1 224 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 C5orf34Q96MH7 638 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 SPSB2Q99619 263 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 WDR54Q9H977 334 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 ZFP64Q9NPA5 681 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 MED11Q9P086 117 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 LUZP4Q9P127 313 aa13.16□□□□□ -0.3
USP4-203ENST00000415188 MYOTQ9UBF9 498 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms