RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 LACC1Q8IV20 430 aa15.64■□□□□ 0.09
PHRF1-202ENST00000413872 ZDHHC23Q8IYP9 409 aa15.64■□□□□ 0.09
PHRF1-202ENST00000413872 ZNF486Q96H40 463 aaPredicted RBP15.64■□□□□ 0.09
PHRF1-202ENST00000413872 FGF20Q9NP95 211 aaPredicted RBP15.64■□□□□ 0.09
PHRF1-202ENST00000413872 TMEM200CA6NKL6 621 aa15.64■□□□□ 0.09
PHRF1-202ENST00000413872 CSF3P09919 207 aa15.64■□□□□ 0.09
PHRF1-202ENST00000413872 ZNF425Q6IV72 752 aa15.64■□□□□ 0.09
PHRF1-202ENST00000413872 RIMS4Q9H426 269 aaPredicted RBP15.64■□□□□ 0.09
PHRF1-202ENST00000413872 GDF2Q9UK05 429 aaPredicted RBP15.64■□□□□ 0.09
PHRF1-202ENST00000413872 ARID1BQ8NFD5 2236 aaPredicted RBP15.63■□□□□ 0.09
PHRF1-202ENST00000413872 ALG1L2C9J202 215 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 GLRA1P23415 457 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 SRP9P49458 86 aaKnown RBP15.63■□□□□ 0.09
PHRF1-202ENST00000413872 CDK5R1Q15078 307 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 NLRC3Q7RTR2 1065 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 OR6K3Q8NGY3 331 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 ROBO4Q8WZ75 1007 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 APOBEC3DQ96AK3 386 aaPredicted RBP15.63■□□□□ 0.09
PHRF1-202ENST00000413872 EID2BQ96D98 161 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 PBOV1Q9GZY1 135 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 A0A1W2PPC1 479 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 BHLHE40O14503 412 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 CLDN1O95832 211 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 FABP1P07148 127 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 CLEC2LP0C7M8 214 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 RAE1P78406 368 aaKnown RBP15.63■□□□□ 0.09
PHRF1-202ENST00000413872 AKR1C1Q04828 323 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 HES1Q14469 280 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.63■□□□□ 0.09
PHRF1-202ENST00000413872 SLCO4A1Q96BD0 722 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 FOXB1Q99853 325 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 ZNF436Q9C0F3 470 aaPredicted RBP15.63■□□□□ 0.09
PHRF1-202ENST00000413872 A0A0B4J2E0 115 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 A0A1B0GX12 115 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 PRKNO60260 465 aaPredicted RBP15.63■□□□□ 0.09
PHRF1-202ENST00000413872 SORDQ00796 357 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 CEACAM16Q2WEN9 425 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 AADACL4Q5VUY2 407 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 TMPRSS11FQ6ZWK6 438 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 NPAP1Q9NZP6 1156 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 HBE1P02100 147 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 CD82P27701 267 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 DDOSTP39656 456 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 KIAA0040Q15053 153 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 PRICKLE4Q2TBC4 344 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 PRSS42Q7Z5A4 293 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 SLC35G3Q8N808 338 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 C12orf10Q9HB07 376 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 UFSP2Q9NUQ7 469 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 SCN1AP35498 2009 aa15.63■□□□□ 0.09
PHRF1-202ENST00000413872 IGFBP1P08833 259 aaPredicted RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CT45A6P0DMU7 189 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CT45A5P0DMU8 189 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CT45A7P0DMV0 189 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CT45A8P0DMV1 189 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CT45A9P0DMV2 189 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 RFX2P48378 723 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CT45A2Q5DJT8 189 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CT45A1Q5HYN5 189 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 RGS7BPQ6MZT1 257 aaPredicted RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 FAM199XQ6PEV8 388 aaPredicted RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CT45A3Q8NHU0 189 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 AIPO00170 330 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 PMP2P02689 132 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 B4GALT1P15291 398 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CHATP28329 748 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 PCBP4P57723 403 aaKnown RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 NKG7Q16617 165 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 WIPI1Q5MNZ9 446 aaPredicted RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 ATPAF1Q5TC12 328 aaPredicted RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 VN1R4Q7Z5H5 301 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 NANPQ8TBE9 248 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 BANF2Q9H503 90 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 METTL17Q9H7H0 456 aaPredicted RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 FAM212BQ9NTI7 297 aaPredicted RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 SSUH2Q9Y2M2 353 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 IGHV3-15A0A0B4J1V0 119 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 ZIC1Q15915 447 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 TMEM211Q6ICI0 200 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 KANSL1Q7Z3B3 1105 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 ST7LQ8TDW4 575 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 UHRF2Q96PU4 802 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 LHX9Q9NQ69 397 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 HEYLQ9NQ87 328 aaPredicted RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.62■□□□□ 0.095e-9■■■□□ 18.1
PHRF1-202ENST00000413872 SHROOM3Q8TF72 1996 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 MCM3APO60318 1980 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 ZNF816-ZNF321PA0A0X1KG74 233 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 ZC3H12DA2A288 527 aaKnown RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 ABCD4O14678 606 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 CTU2Q2VPK5 515 aaKnown RBP15.62■□□□□ 0.09
PHRF1-202ENST00000413872 NUBPLQ8TB37 319 aa15.62■□□□□ 0.09
PHRF1-202ENST00000413872 OR2W5A6NFC9 320 aa15.61■□□□□ 0.09
PHRF1-202ENST00000413872 ELK1P19419 428 aa15.61■□□□□ 0.09
PHRF1-202ENST00000413872 PTAFRP25105 342 aa15.61■□□□□ 0.09
PHRF1-202ENST00000413872 RPS19P39019 145 aaKnown RBP15.61■□□□□ 0.09
PHRF1-202ENST00000413872 MEOX1P50221 254 aa15.61■□□□□ 0.09
PHRF1-202ENST00000413872 SUB1P53999 127 aaKnown RBP eCLIP15.61■□□□□ 0.09
PHRF1-202ENST00000413872 INSM1Q01101 510 aaPredicted RBP15.61■□□□□ 0.09
PHRF1-202ENST00000413872 ZNF266Q14584 549 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms