RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 LYSMD2Q8IV50 215 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 NFAT5O94916 1531 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 P2RY10O00398 339 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 FGF18O76093 207 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 CER1O95813 267 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 SDHBP21912 280 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 GPX8Q8TED1 209 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 RTP4Q96DX8 246 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 CSO75390 466 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 FPR3P25089 353 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 EIF1P41567 113 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 MBOAT2Q6ZWT7 520 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 CALHM2Q9HA72 323 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 PRSS1P07477 247 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 GCAP28676 217 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 LSM11P83369 360 aaKnown RBP eCLIP12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 IGSF11Q5DX21 431 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 LSRQ86X29 649 aaPredicted RBP12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 GABRG1Q8N1C3 465 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 HES7Q9BYE0 225 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 TRAPPC4Q9Y296 219 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 SLC17A4Q9Y2C5 497 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 OOEPA6NGQ2 149 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 SMAD2Q15796 467 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 NXNL2Q5VZ03 156 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 DPY19L2P2Q6ZN68 376 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 C17orf78Q8N4C9 275 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 POM121L2Q96KW2 1035 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 RNF2Q99496 336 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 MMP26Q9NRE1 261 aa12.25□□□□□ -0.45
CCDC88A-204ENST00000413716 PRAMEF26H0Y7S4 382 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 OR2B11Q5JQS5 317 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 OR4A47Q6IF82 309 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 LHFPL2Q6ZUX7 228 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 MRPS24Q96EL2 167 aaKnown RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 ELOVL1Q9BW60 279 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 DMAC2Q9NW81 257 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 DOPEY2Q9Y3R5 2298 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 ROBO1Q9Y6N7 1651 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 WDR1O75083 606 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 TCN2P20062 427 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 NOVA1P51513 510 aaKnown RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 OR1C1Q15619 314 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 IER5LQ5T953 404 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 OR2G6Q5TZ20 316 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 LSMEM1Q8N8F7 131 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 OR4F17Q8NGA8 305 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 ZFPM2Q8WW38 1151 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 CLEC18AA5D8T8 446 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 CCSO14618 274 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 CBR3O75828 277 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 HPP00738 406 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 SOWAHCQ53LP3 525 aaPredicted RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 RBPMS2Q6ZRY4 209 aaKnown RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 MFSD4AQ8N468 514 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 CLEC18CQ8NCF0 446 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 ZNF2Q9BSG1 426 aaPredicted RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 STARD5Q9NSY2 213 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 HOXA4Q00056 320 aaPredicted RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 TSPAN31Q12999 210 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 ZNF542PQ5EBM4 170 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 NHSL2Q5HYW2 709 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 TXNRD3NBQ6F5E7 133 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 PEBP4Q96S96 227 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 GPR61Q9BZJ8 451 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 PRO1933Q9H354 126 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 POLDIP2Q9Y2S7 368 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 PEAK1Q9H792 1746 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 OR2T8A6NH00 312 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 IAPPP10997 89 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 CLEC12BQ2HXU8 276 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 VRK3Q8IV63 474 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 LSM2Q9Y333 95 aaKnown RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 OR4C46A6NHA9 309 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 RING1Q06587 406 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 NMNAT3Q96T66 252 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 RSG1Q9BU20 258 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 TMEM265A0A087WTH1 108 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 RGS13O14921 159 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 ANGPTL5Q86XS5 388 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 C4orf32Q8N8J7 132 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 ARRDC2Q8TBH0 407 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 MOGAT1Q96PD6 335 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 OR2A14Q96R47 310 aa12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 CPPED1Q9BRF8 314 aaPredicted RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 XRN1Q8IZH2 1706 aaKnown RBP12.24□□□□□ -0.45
CCDC88A-204ENST00000413716 TRDV1A0A1B0GX56 115 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 SRP9P49458 86 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 TMEM147Q9BVK8 224 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 CDC14CA4D256 554 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 CCR7P32248 378 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 GPR85P60893 370 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 VRK2Q86Y07 508 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 C10orf126Q8N4M7 172 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 ADAT1Q9BUB4 502 aaKnown RBP12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 SLCO1B1Q9Y6L6 691 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 POM121BA6NF01 834 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 RHBDL1O75783 438 aa12.23□□□□□ -0.45
CCDC88A-204ENST00000413716 COX6CP09669 75 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms