RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 INPP5JQ15735 1006 aaPredicted RBP18.78■□□□□ 0.6
CTCF-202ENST00000401394 CDCP2Q5VXM1 449 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 OR5AP2Q8NGF4 316 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 MAFIPQ8WZ33 124 aa18.78■□□□□ 0.6
CTCF-202ENST00000401394 PHF3Q92576 2039 aaKnown RBP18.77■□□□□ 0.6
CTCF-202ENST00000401394 F8W036 122 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 FARS2O95363 451 aaKnown RBP18.77■□□□□ 0.6
CTCF-202ENST00000401394 PNMTP11086 282 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 HNRNPA2B1P22626 353 aaKnown RBP18.77■□□□□ 0.6
CTCF-202ENST00000401394 SERPINF1P36955 418 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 GFERP55789 205 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 BLOC1S1P78537 153 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 DCXRQ7Z4W1 244 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 TMEM17Q86X19 198 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 C19orf47Q8N9M1 422 aaKnown RBP18.77■□□□□ 0.6
CTCF-202ENST00000401394 DCUN1D4Q92564 292 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 PMM1Q92871 262 aa18.77■□□□□ 0.6
CTCF-202ENST00000401394 A0A1B0GTQ1 180 aa18.77■□□□□ 0.59
CTCF-202ENST00000401394 ZNF705EA8MWA4 302 aaPredicted RBP18.77■□□□□ 0.59
CTCF-202ENST00000401394 RAB27BO00194 218 aa18.77■□□□□ 0.59
CTCF-202ENST00000401394 GLAP06280 429 aa18.77■□□□□ 0.59
CTCF-202ENST00000401394 SLC2A1P11166 492 aa18.77■□□□□ 0.59
CTCF-202ENST00000401394 ARRB1P49407 418 aaPredicted RBP18.77■□□□□ 0.59
CTCF-202ENST00000401394 RSPO4Q2I0M5 234 aaPredicted RBP18.77■□□□□ 0.59
CTCF-202ENST00000401394 RNASE10Q5GAN6 216 aaKnown RBP18.77■□□□□ 0.59
CTCF-202ENST00000401394 ACOT7LQ6ZUV0 252 aa18.77■□□□□ 0.59
CTCF-202ENST00000401394 OOSP2Q86WS3 158 aa18.77■□□□□ 0.59
CTCF-202ENST00000401394 EMC6Q9BV81 110 aa18.77■□□□□ 0.59
CTCF-202ENST00000401394 SLC6A15Q9H2J7 730 aa18.77■□□□□ 0.59
CTCF-202ENST00000401394 H7C2Y5 167 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 ZNF208O43345 1280 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 STK17BO94768 372 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 TXNDC12O95881 172 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 BGLAPP02818 100 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 CBR1P16152 277 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 RBM39Q14498 530 aaKnown RBP18.76■□□□□ 0.59
CTCF-202ENST00000401394 SLC18B1Q6NT16 456 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 ALX4Q9H161 411 aaPredicted RBP18.76■□□□□ 0.59
CTCF-202ENST00000401394 HRH4Q9H3N8 390 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 MED29Q9NX70 200 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 DHCR7Q9UBM7 475 aaKnown RBP18.76■□□□□ 0.59
CTCF-202ENST00000401394 KCNK7Q9Y2U2 307 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 PNLIPRP2P54317 469 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 TGIF1Q15583 401 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 ZNF587Q96SQ5 575 aaPredicted RBP18.76■□□□□ 0.59
CTCF-202ENST00000401394 USB1Q9BQ65 265 aaKnown RBP18.76■□□□□ 0.59
CTCF-202ENST00000401394 SLC19A3Q9BZV2 496 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 TREM1Q9NP99 234 aa18.76■□□□□ 0.59
CTCF-202ENST00000401394 GDF2Q9UK05 429 aaPredicted RBP18.76■□□□□ 0.59
CTCF-202ENST00000401394 IGLV1-36A0A0B4J1U3 117 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 NR0B1P51843 470 aaKnown RBP18.75■□□□□ 0.59
CTCF-202ENST00000401394 TEX30Q5JUR7 227 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 H3F3CQ6NXT2 135 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 COX15Q7KZN9 410 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 LYG2Q86SG7 212 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 ADGRE4PQ86SQ3 457 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 CATSPERDQ86XM0 798 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 ARMC10Q8N2F6 343 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 GTPBP8Q8N3Z3 284 aaPredicted RBP18.75■□□□□ 0.59
CTCF-202ENST00000401394 NUBPLQ8TB37 319 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 SLC25A21Q9BQT8 299 aaPredicted RBP18.75■□□□□ 0.59
CTCF-202ENST00000401394 NUDT22Q9BRQ3 303 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 MKL2Q9ULH7 1088 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 CLDN4O14493 209 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 ZNF217O75362 1048 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 WDPCPO95876 746 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 NPY4RP50391 375 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 RIDAP52758 137 aaKnown RBP18.75■□□□□ 0.59
CTCF-202ENST00000401394 SLC37A1P57057 533 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 CCINQ13939 588 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 ZSCAN4Q8NAM6 433 aaPredicted RBP18.75■□□□□ 0.59
CTCF-202ENST00000401394 EDEM2Q9BV94 578 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 UPB1Q9UBR1 384 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 CKLFQ9UBR5 152 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 SPP1P10451 314 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 AGTR1P30556 359 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 ARMC6Q6NXE6 501 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 SLC29A4Q7RTT9 530 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 SLC26A10Q8NG04 563 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 OR51F2Q8NH61 342 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 THAP6Q8TBB0 222 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 ADAT3Q96EY9 351 aaPredicted RBP18.75■□□□□ 0.59
CTCF-202ENST00000401394 TMEM14AQ9Y6G1 99 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 CABIN1Q9Y6J0 2220 aa18.75■□□□□ 0.59
CTCF-202ENST00000401394 ZNF432O94892 652 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 IGFBP3P17936 291 aaPredicted RBP18.74■□□□□ 0.59
CTCF-202ENST00000401394 INO80EQ8NBZ0 244 aaPredicted RBP18.74■□□□□ 0.59
CTCF-202ENST00000401394 THAP3Q8WTV1 239 aaPredicted RBP18.74■□□□□ 0.59
CTCF-202ENST00000401394 RNF126Q9BV68 326 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 BANF2Q9H503 90 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 SLC22A11Q9NSA0 550 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 OR5AC2Q9NZP5 309 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 UNC13CQ8NB66 2214 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 TMEM269A0A1B0GVZ9 245 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 OR2F2O95006 317 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 PVALBP20472 110 aaPredicted RBP18.74■□□□□ 0.59
CTCF-202ENST00000401394 OR2F1Q13607 317 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.74■□□□□ 0.59
CTCF-202ENST00000401394 PRTGQ2VWP7 1150 aa18.74■□□□□ 0.59
CTCF-202ENST00000401394 FBXO46Q6PJ61 603 aaPredicted RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms