RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 POM121L2Q96KW2 1035 aa13.56□□□□□ -0.24
CUX2-202ENST00000397643 PKP2Q99959 881 aa13.56□□□□□ -0.24
CUX2-202ENST00000397643 MRPL13Q9BYD1 178 aaKnown RBP13.56□□□□□ -0.24
CUX2-202ENST00000397643 KLHL21Q9UJP4 597 aa13.56□□□□□ -0.24
CUX2-202ENST00000397643 MMP24Q9Y5R2 645 aa13.56□□□□□ -0.24
CUX2-202ENST00000397643 LOC100509620A0A075B734 347 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 F5H0A9 414 aaPredicted RBP13.55□□□□□ -0.24
CUX2-202ENST00000397643 RNF13O43567 381 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 MGRN1O60291 552 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 PIP5K1CO60331 668 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 OR6A2O95222 327 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 HIST1H2ABP04908 130 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 IGHV4-38-2P0DP08 117 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 STOMP27105 288 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 SLC6A9P48067 706 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 ZNF133P52736 654 aaPredicted RBP13.55□□□□□ -0.24
CUX2-202ENST00000397643 HSF2Q03933 536 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 PLP2Q04941 152 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 ZNF718Q3SXZ3 478 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 C9orf139Q6ZV77 190 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 HIST3H2AQ7L7L0 130 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 PQLC1Q8N2U9 271 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 LRRC18Q8N456 261 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 NOXO1Q8NFA2 376 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 OR5K1Q8NHB7 308 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 GIPC3Q8TF64 312 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 WFDC12Q8WWY7 111 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 HIST1H2ACQ93077 130 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 TMIGD2Q96BF3 282 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 OR2J1Q9GZK6 312 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 EGLN1Q9GZT9 426 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 PATZ1Q9HBE1 687 aaKnown RBP13.55□□□□□ -0.24
CUX2-202ENST00000397643 PDP1Q9P0J1 537 aaPredicted RBP13.55□□□□□ -0.24
CUX2-202ENST00000397643 ZNF229Q9UJW7 825 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 RRP15Q9Y3B9 282 aaKnown RBP13.55□□□□□ -0.24
CUX2-202ENST00000397643 UGT2A1Q9Y4X1 527 aa13.55□□□□□ -0.24
CUX2-202ENST00000397643 PLSCR5A0PG75 271 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 EFCAB9A8MZ26 197 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 OR7A10O76100 309 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 IGHG1P01857 330 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 ASAH2BP0C7U1 165 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 FUT1P19526 365 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 CCNOP22674 350 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 OMGP23515 440 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 PAX8Q06710 450 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 RCN1Q15293 331 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 TMEM155Q4W5P6 130 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 C10orf128Q5T292 105 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 TMPRSS11FQ6ZWK6 438 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 JAZF1Q86VZ6 243 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 ZDHHC13Q8IUH4 622 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 OR10G2Q8NGC3 310 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 GNPDA2Q8TDQ7 276 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 NABP1Q96AH0 204 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 SEMA6AQ9H2E6 1030 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 DCLRE1BQ9H816 532 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 MSL2Q9HCI7 577 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 NANSQ9NR45 359 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 CYSLTR2Q9NS75 346 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 C20orf141Q9NUB4 165 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 TMEM106BQ9NUM4 274 aa13.54□□□□□ -0.24
CUX2-202ENST00000397643 ARRDC5A6NEK1 342 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 G3V2T6 193 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 ICMTO60725 284 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 SBK2P0C263 348 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 ZNF32P17041 273 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 CD80P33681 288 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 OMPP47874 163 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 CLRN1P58418 232 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 PAX2Q02962 417 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 LAPTM4AQ15012 233 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 C1orf94Q6P1W5 598 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 SPATC1Q76KD6 591 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 ZER1Q7Z7L7 766 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 TMEM179BQ7Z7N9 219 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 PARP8Q8N3A8 854 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 SPICQ8N5J4 248 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 ZNF283Q8N7M2 679 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 OR9Q2Q8NGE9 314 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 LIPHQ8WWY8 451 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 ASB10Q8WXI3 467 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 NMD3Q96D46 503 aaKnown RBP13.53□□□□□ -0.24
CUX2-202ENST00000397643 FAM46AQ96IP4 442 aaKnown RBP13.53□□□□□ -0.24
CUX2-202ENST00000397643 SIGLEC11Q96RL6 698 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 DCLRE1CQ96SD1 692 aaKnown RBP13.53□□□□□ -0.24
CUX2-202ENST00000397643 MRI1Q9BV20 369 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 MS4A7Q9GZW8 240 aaPredicted RBP13.53□□□□□ -0.24
CUX2-202ENST00000397643 SIAEQ9HAT2 523 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 CGGBP1Q9UFW8 167 aaPredicted RBP13.53□□□□□ -0.24
CUX2-202ENST00000397643 ZDHHC8Q9ULC8 765 aa13.53□□□□□ -0.24
CUX2-202ENST00000397643 IGHV3OR16-10A0A075B7F0 116 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 IGKV1D-43A0A0B4J1Z2 117 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 MDFIC2A0A1B0GVS7 189 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 C5orf49A4QMS7 147 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 SLC2A10O95528 541 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 PLATP00750 562 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 NGFP01138 241 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 ANXA8P13928 327 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 FPR3P25089 353 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 CDAP32320 146 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms