RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 FFAR4Q5NUL3 377 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF813Q6ZN06 617 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 FAM71CQ8NEG0 241 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 WFDC5Q8TCV5 224 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 MUCL1Q96DR8 90 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 FGF21Q9NSA1 209 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 A0A1B0GUH1 482 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 NKX2-1P43699 371 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 DUSP8Q13202 625 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 SFT2D1Q8WV19 159 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 CSF3RQ99062 836 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 CSAG2Q9Y5P2 127 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 RGPD2P0DJD1 1756 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 DOT1LQ8TEK3 1739 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 A0A0A6YYJ9 748 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 A0A1W2PR48 441 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC22A20A6NK97 555 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 RFPL4AA6NLU0 287 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 RFPL4AL1F8VTS6 287 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 LGALS8O00214 317 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 TNFRSF10CO14798 259 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 RGS11O94810 467 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 DUSP1P28562 367 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 DOC2BQ14184 412 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 C9orf152Q5JTZ5 239 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 GGNBP1Q5YKI7 109 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 TCTN3Q6NUS6 607 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM104Q8NE00 496 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 MEGF10Q96KG7 1140 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 TPPP3Q9BW30 176 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 FGF20Q9NP95 211 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 DHCR7Q9UBM7 475 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 CRYBG1Q9Y4K1 1723 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 MN1Q10571 1320 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 PRAMEF25A6NGN4 478 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TARM1B6A8C7 271 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 NXPH2O95156 264 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 CER1O95813 267 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 H2AFB1P0C5Y9 115 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF385BQ569K4 471 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 MARCH3Q86UD3 253 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 OR13D1Q8NGV5 346 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 CABLES2Q9BTV7 478 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 IKZF5Q9H5V7 419 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 DYNLRB1Q9NP97 96 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TAS2R4Q9NYW5 299 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 B3GAT1Q9P2W7 334 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 SLCO1B1Q9Y6L6 691 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TEX50A0A1B0GTY4 177 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 A0A1B0GV72 72 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM202A6NGA9 273 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 DVL1O14640 695 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 BCAT2O15382 392 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 CTXN2P0C2S0 81 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ADRA2CP18825 462 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 SDHAP31040 664 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 DVL1P1P54792 670 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 FABP5Q01469 135 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 LTC4SQ16873 150 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TRMT12Q53H54 448 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 OTUD1Q5VV17 481 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF573Q86YE8 665 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 APH1BQ8WW43 257 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ASB13Q8WXK3 278 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 PLK3Q9H4B4 646 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 OCEL1Q9H607 264 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 HEYLQ9NQ87 328 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 IL17BQ9UHF5 180 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 PCDHB10Q9UN67 800 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 PIGLQ9Y2B2 252 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 NTNG1Q9Y2I2 539 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TRAV34A0A0B4J273 112 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 H3BQ06 376 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 B3GALT4O96024 378 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 IGLV3-25P01717 112 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ALOX5APP20292 161 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 PSMB6P28072 239 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ELAVL1Q15717 326 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 SYT13Q7L8C5 426 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 DTD1Q8TEA8 209 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 SMIM19Q96E16 107 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ZBP1Q9H171 429 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 PDFQ9HBH1 243 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF724A8MTY0 619 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TIMM8AO60220 97 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TBPP20226 339 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 APOBEC1P41238 236 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 MLF1P58340 268 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 AQP6Q13520 282 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 HSF5Q4G112 596 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM97Q5BJF2 176 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 Q5PR19 223 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ANKRD34AQ69YU3 496 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF680Q8NEM1 530 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 GNPNAT1Q96EK6 184 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM231Q9H6L2 316 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 RAB18Q9NP72 206 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 KCNG2Q9UJ96 466 aa9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 STRAPQ9Y3F4 350 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-203ENST00000396595 CHD4Q14839 1912 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms