RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ZSCAN26Q16670 478 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 COG8Q96MW5 612 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 ATF6BQ99941 703 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 GABARAPL3Q9BY60 117 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 OR2J1Q9GZK6 312 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 DLL4Q9NR61 685 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 SLCO1C1Q9NYB5 712 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 GPR160Q9UJ42 338 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 GRIP1Q9Y3R0 1128 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 ZNF593O00488 134 aaPredicted RBP18.61■□□□□ 0.57
CLN3-207ENST00000395653 CLPTM1O96005 669 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 IGHV3-13P01766 116 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 ERCC1P07992 297 aaPredicted RBP18.61■□□□□ 0.57
CLN3-207ENST00000395653 SPARCP09486 303 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 GSTT1P30711 240 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 GCH1P30793 250 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 RPS27P42677 84 aaKnown RBP18.61■□□□□ 0.57
CLN3-207ENST00000395653 MOGQ16653 247 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 KRTAP27-1Q3LI81 207 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 SLC35D3Q5M8T2 416 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 SPATA46Q5T0L3 261 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 MBNL2Q5VZF2 373 aaKnown RBP18.61■□□□□ 0.57
CLN3-207ENST00000395653 TMEM154Q6P9G4 183 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 CXXC5Q7LFL8 322 aaKnown RBP18.61■□□□□ 0.57
CLN3-207ENST00000395653 KLF14Q8TD94 323 aaPredicted RBP18.61■□□□□ 0.57
CLN3-207ENST00000395653 NEU4Q8WWR8 484 aaPredicted RBP18.61■□□□□ 0.57
CLN3-207ENST00000395653 INTS14Q96SY0 518 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 DDX28Q9NUL7 540 aaKnown RBP18.61■□□□□ 0.57
CLN3-207ENST00000395653 USE1Q9NZ43 259 aa18.61■□□□□ 0.57
CLN3-207ENST00000395653 TRIM64A6NGJ6 449 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 TRIM64BA6NI03 449 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 ALPLP05186 524 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 PSKH1P11801 424 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 FOSL1P15407 271 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 ALDH3B1P43353 468 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 DSCR9P59020 149 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 MAD2L1BPQ15013 274 aaPredicted RBP18.6■□□□□ 0.57
CLN3-207ENST00000395653 NKPD1Q17RQ9 610 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 RSPO1Q2MKA7 263 aaPredicted RBP18.6■□□□□ 0.57
CLN3-207ENST00000395653 C12orf73Q69YU5 71 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 DCXRQ7Z4W1 244 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 PQLC1Q8N2U9 271 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 OR10S1Q8NGN2 331 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 STMN2Q93045 179 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 TAAR3PQ9P1P4 343 aa18.6■□□□□ 0.57
CLN3-207ENST00000395653 EI24O14681 340 aa18.59■□□□□ 0.57
CLN3-207ENST00000395653 SLC2A5P22732 501 aa18.59■□□□□ 0.57
CLN3-207ENST00000395653 KLHL12Q53G59 568 aa18.59■□□□□ 0.57
CLN3-207ENST00000395653 CLEC2AQ6UVW9 174 aa18.59■□□□□ 0.57
CLN3-207ENST00000395653 ERI1Q8IV48 349 aaKnown RBP18.59■□□□□ 0.57
CLN3-207ENST00000395653 TIGD4Q8IY51 512 aa18.59■□□□□ 0.57
CLN3-207ENST00000395653 ZCCHC24Q8N2G6 241 aaKnown RBP18.59■□□□□ 0.57
CLN3-207ENST00000395653 BBS1Q8NFJ9 593 aa18.59■□□□□ 0.57
CLN3-207ENST00000395653 ZMYND19Q96E35 227 aaPredicted RBP18.59■□□□□ 0.57
CLN3-207ENST00000395653 MYOZ1Q9NP98 299 aaPredicted RBP18.59■□□□□ 0.57
CLN3-207ENST00000395653 PRKYO43930 277 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 LY6HO94772 140 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 CSF3P09919 207 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 MPV17P39210 176 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 ALDH3A2P51648 485 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 EFNB1P98172 346 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 TNK1Q13470 666 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 COLCA1Q6ZS62 124 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 SHFQ7M4L6 423 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 DPY19L4Q7Z388 723 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 ZNF525Q8N782 197 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 OR6N2Q8NGY6 317 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 ST7LQ8TDW4 575 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 SNX33Q8WV41 574 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 APOBEC3DQ96AK3 386 aaPredicted RBP18.58■□□□□ 0.57
CLN3-207ENST00000395653 C18orf12Q96KH6 178 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 RIBC2Q9H4K1 309 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 STARD10Q9Y365 291 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 ORC6Q9Y5N6 252 aa18.58■□□□□ 0.57
CLN3-207ENST00000395653 F5H5K5 113 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 ACSM4P0C7M7 580 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 POLR2IP36954 125 aaKnown RBP18.57■□□□□ 0.56
CLN3-207ENST00000395653 RPS7P62081 194 aaKnown RBP18.57■□□□□ 0.56
CLN3-207ENST00000395653 CBR4Q8N4T8 237 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 OR5L1Q8NGL2 311 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 SPTSSAQ969W0 71 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 SLAMF6Q96DU3 332 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 COX4I2Q96KJ9 171 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 RHNO1Q9BSD3 238 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 C9orf16Q9BUW7 83 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 C1QTNF5Q9BXJ0 243 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 TPK1Q9H3S4 243 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 CGGBP1Q9UFW8 167 aaPredicted RBP18.57■□□□□ 0.56
CLN3-207ENST00000395653 ACANP16112 2415 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 ZNF878C9JN71 531 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 H7C1Q1 480 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 TLX2O43763 284 aaPredicted RBP18.57■□□□□ 0.56
CLN3-207ENST00000395653 MT-ND5P03915 603 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 NAT2P11245 290 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 OTX1P32242 354 aaPredicted RBP18.57■□□□□ 0.56
CLN3-207ENST00000395653 RAD23AP54725 363 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 TPTEP56180 551 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 APOFQ13790 326 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 TMEM255AQ5JRV8 349 aa18.57■□□□□ 0.56
CLN3-207ENST00000395653 TCEANCQ8N8B7 351 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms