RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ACTG2P63267 376 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 BSPH1Q075Z2 132 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 TNK1Q13470 666 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 MSMPQ1L6U9 139 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 TBC1D28Q2M2D7 210 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 KLBQ86Z14 1044 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 NANOGP1Q8N7R0 232 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SLC30A7Q8NEW0 376 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PROKR2Q8NFJ6 384 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 UBE2FQ969M7 185 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 HAVCR1Q96D42 359 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SLAMF6Q96DU3 332 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 ATF6BQ99941 703 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 GSX2Q9BZM3 304 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 KCNN2Q9H2S1 579 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 SEC61A2Q9H9S3 476 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 BEX4Q9NWD9 120 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 PAK1IP1Q9NWT1 392 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-202ENST00000394943 ERVK13-1Q9NX77 482 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 UBAP1Q9NZ09 502 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 ST6GALNAC2Q9UJ37 374 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 FREM1Q5H8C1 2179 aa6.04□□□□□ -1.44
LIMA1-202ENST00000394943 E7EQL1 145 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 SLC1A7O00341 560 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 SELENOFO60613 162 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 JUNBP17275 347 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 LIPAP38571 399 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ERFP50548 548 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 UBE2NP61088 152 aaKnown RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 PRSS57Q6UWY2 283 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 IZUMO2Q6UXV1 221 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 PRSS48Q7RTY5 328 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 PAQR4Q8N4S7 273 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 CYB561A3Q8NBI2 242 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 PIGTQ969N2 578 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 MRPL24Q96A35 216 aaKnown RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF775Q96BV0 537 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 RNFT2Q96EX2 444 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 AMELYQ99218 206 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ELOVL3Q9HB03 270 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ABCB9Q9NP78 766 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 SH3BGRL2Q9UJC5 107 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 R4GMQ9 66 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 HIVEP3Q5T1R4 2406 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 FAM183AA6NL82 134 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 RAB36O95755 333 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 CST4P01036 141 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 LYNP07948 512 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 CELA3BP08861 270 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 COX6B1P14854 86 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 RAC2P15153 192 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 GATA4P43694 442 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 MMP15P51511 669 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 UCP2P55851 309 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 RPS23P62266 143 aaKnown RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF181Q2M3W8 571 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 UBE2UQ5VVX9 321 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ELMOD2Q8IZ81 293 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 UBE2J2Q8N2K1 259 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 OR9Q1Q8NGQ5 310 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 C4orf45Q96LM5 186 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 SRA1Q9HD15 236 aaKnown RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 EMC7Q9NPA0 242 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 CACNA1BQ00975 2339 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF462Q96JM2 2506 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 hCG_38984A0A1B0GV85 526 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 IQCMA0A1B0GVH7 501 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 A0A1W2PQL4 384 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 METTL15A6NJ78 407 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF670-ZNF695F2Z2N8 137 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 HLA-HP01893 362 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 MT-ND2P03891 347 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 APOBEC3AP31941 199 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ADAM8P78325 824 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF774Q6NX45 483 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 UNQ9370/PRO34162Q6UXP9 181 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ZNF704Q6ZNC4 412 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 SSX6Q7RTT6 188 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 DCXRQ7Z4W1 244 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 LYPD6Q86Y78 171 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 KRTAP1-3Q8IUG1 177 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 OR52H1Q8NGJ2 320 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 LINC01560Q8TB33 94 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 NSMAFQ92636 917 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 APOBEC3DQ96AK3 386 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-202ENST00000394943 DIRC2Q96SL1 478 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 ASH2LQ9UBL3 628 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 CACNA1CQ13936 2221 aa6.03□□□□□ -1.44
LIMA1-202ENST00000394943 A0A1B0GTI1 187 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 A0A1W2PPL8 197 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 ANKRD61A6NGH8 418 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 XRCC2O43543 280 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 DOK2O60496 412 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 GPANK1O95872 356 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 SELEP16581 610 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 RAD52P43351 418 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 TSC22D1Q15714 1073 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 TBCEQ15813 527 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-202ENST00000394943 ADIPOQQ15848 244 aa6.02□□□□□ -1.45
LIMA1-202ENST00000394943 FAM76BQ5HYJ3 339 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms