RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PRR30Q53SZ7 412 aaPredicted RBP9.21□□□□□ -0.94
COL6A3-205ENST00000392004 GPR139Q6DWJ6 353 aa9.21□□□□□ -0.94
COL6A3-205ENST00000392004 LAMTOR1Q6IAA8 161 aa9.21□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF627Q7L945 461 aa9.21□□□□□ -0.94
COL6A3-205ENST00000392004 RND1Q92730 232 aa9.21□□□□□ -0.94
COL6A3-205ENST00000392004 DPAGT1Q9H3H5 408 aa9.21□□□□□ -0.94
COL6A3-205ENST00000392004 ENAMQ9NRM1 1142 aa9.21□□□□□ -0.94
COL6A3-205ENST00000392004 RDH8Q9NYR8 311 aa9.21□□□□□ -0.94
COL6A3-205ENST00000392004 ATP23Q9Y6H3 246 aa9.21□□□□□ -0.94
COL6A3-205ENST00000392004 SSNA1O43805 119 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 RAF1P04049 648 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 NPR2P20594 1047 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 GABRA5P31644 462 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 MNDAP41218 407 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 TNFSF10P50591 281 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 IGFBP7Q16270 282 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 KLHL26Q53HC5 615 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 ARIH2OSQ8N7S6 290 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 CPNE4Q96A23 557 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-205ENST00000392004 TMEM41AQ96HV5 264 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 FCRL1Q96LA6 429 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF385AQ96PM9 386 aaKnown RBP9.2□□□□□ -0.94
COL6A3-205ENST00000392004 PTTG3PQ9NZH4 202 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 SPATA2Q9UM82 520 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 TMEM14AQ9Y6G1 99 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 CENPEQ02224 2701 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 DOCK10Q96BY6 2186 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 LOC100509620A0A075B734 347 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 IGKV3D-11A0A0A0MRZ8 115 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 A0A1B0GVC2 190 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 FFAR1O14842 300 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 FPR3P25089 353 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 Q0VFX4 171 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 SKP2Q13309 424 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF74Q16587 644 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 RASSF6Q6ZTQ3 369 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 ABHD4Q8TB40 342 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 ELP5Q8TE02 316 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 CTHRC1Q96CG8 243 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 NPAS1Q99742 590 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 PAPOLGQ9BWT3 736 aaKnown RBP9.2□□□□□ -0.94
COL6A3-205ENST00000392004 B3GALT5Q9Y2C3 310 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 A0A1W2PNU3 283 aaPredicted RBP9.2□□□□□ -0.94
COL6A3-205ENST00000392004 IMPA2O14732 288 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 TMEM225BP0DP42 221 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 CFL1P23528 166 aaKnown RBP9.2□□□□□ -0.94
COL6A3-205ENST00000392004 C21orf58P58505 322 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 ARF1P84077 181 aaKnown RBP9.2□□□□□ -0.94
COL6A3-205ENST00000392004 C12orf73Q69YU5 71 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF620Q6ZNG0 422 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 SPTSSAQ969W0 71 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 KLHDC3Q9BQ90 382 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 DEPPQ9NTK1 212 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 SHANK1Q9Y566 2161 aa9.2□□□□□ -0.94
COL6A3-205ENST00000392004 DENND4CQ5VZ89 1909 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 HSPB6O14558 160 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 PRODHO43272 600 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 TSPAN2O60636 221 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 NCR1O76036 304 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 AQP8O94778 261 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 DBHP09172 617 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 FCGR2AP12318 317 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 ARFRP1Q13795 201 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF141Q15928 474 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 RNLSQ5VYX0 342 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 FAM26EQ8N5C1 309 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 OR13C3Q8NGS6 347 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 SPACA5Q96QH8 159 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 PPP1R3EQ9H7J1 279 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 ASCL3Q9NQ33 180 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 DHDHQ9UQ10 334 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 HDGFL3Q9Y3E1 203 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 MAB21L2Q9Y586 359 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 TMEM229AB2RXF0 380 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 TIMM8AO60220 97 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-205ENST00000392004 DNASE1P24855 282 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 PCBP3P57721 371 aaKnown RBP9.19□□□□□ -0.94
COL6A3-205ENST00000392004 TPBGQ13641 420 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 GPR176Q14439 515 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 TMEM44Q2T9K0 475 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 GLRX5Q86SX6 157 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 PCNPQ8WW12 178 aaKnown RBP9.19□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF582Q96NG8 517 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-205ENST00000392004 PPA2Q9H2U2 334 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 OR51J1Q9H342 316 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 NDRG3Q9UGV2 375 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 ELF5Q9UKW6 265 aaPredicted RBP9.19□□□□□ -0.94
COL6A3-205ENST00000392004 A0A0A6YYJ9 748 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 TRDV1A0A1B0GX56 115 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 MT-ATP6P00846 226 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 HLA-DQB1P01920 261 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 ZNF250P15622 560 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 FABP5Q01469 135 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 SPOCK1Q08629 439 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 RAB40BQ12829 278 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 DOC2BQ14184 412 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 GRK1Q15835 563 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 DPY19L2P2Q6ZN68 376 aa9.19□□□□□ -0.94
COL6A3-205ENST00000392004 COMTD1Q86VU5 262 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms