RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ST8SIA1Q92185 356 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 REG4Q9BYZ8 158 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 TGIF2Q9GZN2 237 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 SDHAF2Q9NX18 166 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 SEMA5BQ9P283 1151 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 ARID1BQ8NFD5 2236 aaPredicted RBP8.66□□□□□ -1.02
COL6A3-204ENST00000392003 CNTRLQ7Z7A1 2325 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 TRAV8-7A0A075B6U6 113 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 SYPP08247 313 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 DNASE1P24855 282 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 PTH2RP49190 550 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 ST3GAL2Q16842 350 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 GLT8D1Q68CQ7 371 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 RHBDD2Q6NTF9 364 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 OR10AC1Q8NH08 325 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 ZNF519Q8TB69 540 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 RNF128Q8TEB7 428 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 HEXA-AS1Q9H8Q6 139 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 TAS2R8Q9NYW2 309 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 KLK11Q9UBX7 282 aa8.66□□□□□ -1.02
COL6A3-204ENST00000392003 CACNA1CQ13936 2221 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 A0A087WV48 116 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 ABCD4O14678 606 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 ARPC1BO15143 372 aaKnown RBP8.65□□□□□ -1.02
COL6A3-204ENST00000392003 TXNL1O43396 289 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 SPP1P10451 314 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 DAP3P51398 398 aaKnown RBP8.65□□□□□ -1.02
COL6A3-204ENST00000392003 NKAIN1Q4KMZ8 207 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 THEM4Q5T1C6 240 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 C1orf185Q5T7R7 199 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 PMS2CLQ68D20 193 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 FDX2Q6P4F2 183 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 KANSL1Q7Z3B3 1105 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.65□□□□□ -1.02
COL6A3-204ENST00000392003 PRSS35Q8N3Z0 413 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 ZNF441Q8N8Z8 693 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 OR51D1Q8NGF3 324 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 RNF166Q96A37 237 aaPredicted RBP8.65□□□□□ -1.02
COL6A3-204ENST00000392003 CXorf58Q96LI9 332 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 AMELYQ99218 206 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 NOX3Q9HBY0 568 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 ANKRD10Q9NXR5 420 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 FBXL2Q9UKC9 423 aa8.65□□□□□ -1.02
COL6A3-204ENST00000392003 ANKRD20A5PA0PJZ0 165 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 ANKUB1A6NFN9 424 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 RAD1O60671 282 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 GLSO94925 669 aaPredicted RBP8.65□□□□□ -1.03
COL6A3-204ENST00000392003 FBXO45P0C2W1 286 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 CTLA4P16410 223 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 KIR3DL2P43630 455 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 DNASE1L1P49184 302 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 EMP2P54851 167 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 INSM1Q01101 510 aaPredicted RBP8.65□□□□□ -1.03
COL6A3-204ENST00000392003 OR7A5Q15622 319 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 EIF2S3LQ2VIR3 472 aaKnown RBP8.65□□□□□ -1.03
COL6A3-204ENST00000392003 TRIM61Q5EBN2 209 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 OTPQ5XKR4 325 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 ZNF782Q6ZMW2 699 aaPredicted RBP8.65□□□□□ -1.03
COL6A3-204ENST00000392003 GLB1L2Q8IW92 636 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 OR10H5Q8NGA6 315 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 OR5L2Q8NGL0 311 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 DDIT4LQ96D03 193 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 CLEC4MQ9H2X3 399 aaPredicted RBP8.65□□□□□ -1.03
COL6A3-204ENST00000392003 KLRF1Q9NZS2 232 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 SCP2D1Q9UJQ7 156 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 SLC22A13Q9Y226 551 aa8.65□□□□□ -1.03
COL6A3-204ENST00000392003 COA3Q9Y2R0 106 aaPredicted RBP8.65□□□□□ -1.03
COL6A3-204ENST00000392003 VSTM2BA6NLU5 285 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 XRCC3O43542 346 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 NPIPB7O75200 414 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 ALOX12BO75342 701 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 MPC2O95563 127 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 HCKP08631 526 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 MNDAP41218 407 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 APOBEC1P41238 236 aaKnown RBP8.64□□□□□ -1.03
COL6A3-204ENST00000392003 VEGFCP49767 419 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 EFNA3P52797 238 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 SUMO3P55854 103 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-204ENST00000392003 FBXW4P57775 412 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 FOXL2P58012 376 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 SNRPEP62304 92 aaKnown RBP8.64□□□□□ -1.03
COL6A3-204ENST00000392003 CDPF1Q6NVV7 123 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 NDUFAF7Q7L592 441 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 ABHD6Q9BV23 337 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 FLVCR2Q9UPI3 526 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 MEIKINA0A087WXM9 373 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 IGLV1-36A0A0B4J1U3 117 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 CCDC163A0A0D9SF12 145 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 C2orf72A6NCS6 295 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 TOX3O15405 576 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-204ENST00000392003 TNRC18O15417 2968 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-204ENST00000392003 SULT1A3P0DMM9 295 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 SULT1A4P0DMN0 295 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 CXCL3P19876 107 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 C4BPBP20851 252 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 TLE3Q04726 772 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 PAPD4Q6PIY7 484 aaKnown RBP8.64□□□□□ -1.03
COL6A3-204ENST00000392003 H1FNTQ75WM6 255 aaPredicted RBP8.64□□□□□ -1.03
COL6A3-204ENST00000392003 ANKRD37Q7Z713 158 aa8.64□□□□□ -1.03
COL6A3-204ENST00000392003 PPP1R3BQ86XI6 285 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms